RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 NR0B2Q15466 257 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 RGS7BPQ6MZT1 257 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 C17orf107Q6ZR85 190 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 ADGRE4PQ86SQ3 457 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 TMEM234Q8WY98 164 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 FGGYQ96C11 551 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 ZNF501Q96CX3 271 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 SLC22A11Q9NSA0 550 aa16.05■□□□□ 0.16
VIM-206ENST00000487938 ATXN7L1Q9ULK2 861 aaPredicted RBP16.05■□□□□ 0.16
VIM-206ENST00000487938 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 H3BML4 177 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 MBTPS2O43462 519 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 NMBP08949 121 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 LIPCP11150 499 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 GABRA1P14867 456 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 PPP3CBP16298 524 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 FSTP19883 344 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 PTGS2P35354 604 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 SSBP1Q04837 148 aaKnown RBP16.04■□□□□ 0.16
VIM-206ENST00000487938 UBXN2BQ14CS0 331 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 H1FNTQ75WM6 255 aaPredicted RBP16.04■□□□□ 0.16
VIM-206ENST00000487938 CD163Q86VB7 1156 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 GALNT11Q8NCW6 608 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 DMRTA2Q96SC8 542 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 SLC7A5P2Q9GIP4 190 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 FBXL2Q9UKC9 423 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 KLK13Q9UKR3 277 aa16.04■□□□□ 0.16
VIM-206ENST00000487938 TUBAL3A6NHL2 446 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 SULT1C2O00338 296 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 LDLRAD4O15165 306 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 CYB5AP00167 134 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 OPN1LWP04000 364 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 H2BFMP0C1H6 154 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 TLE3Q04726 772 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 TDGQ13569 410 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 TOMM20Q15388 145 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 NKPD1Q17RQ9 610 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 GSG1LQ6UXU4 331 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 GPAT4Q86UL3 456 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 BPIFB2Q8N4F0 458 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 C12orf45Q8N5I9 185 aaPredicted RBP16.03■□□□□ 0.16
VIM-206ENST00000487938 STT3BQ8TCJ2 826 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 CMBLQ96DG6 245 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 LINC00052Q96N35 136 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 KCNK17Q96T54 332 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 NUDT22Q9BRQ3 303 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 PHF7Q9BWX1 381 aaPredicted RBP16.03■□□□□ 0.16
VIM-206ENST00000487938 POTEKPQ9BYX7 375 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 UPB1Q9UBR1 384 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 COL5A1P20908 1838 aaPredicted RBP16.03■□□□□ 0.16
VIM-206ENST00000487938 LOC100509620A0A075B734 347 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 MEGF11A6BM72 1044 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 ZNF736B4DX44 427 aaPredicted RBP16.03■□□□□ 0.16
VIM-206ENST00000487938 PMS2P2O95744 297 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 ZNF735P0CB33 412 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 ACHEP22303 614 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 GMFBP60983 142 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 HSF1Q00613 529 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 COX15Q7KZN9 410 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 SLC25A45Q8N413 288 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 PLPP5Q8NEB5 264 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 C5orf34Q96MH7 638 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 SLC6A7Q99884 636 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 ALX4Q9H161 411 aaPredicted RBP16.03■□□□□ 0.16
VIM-206ENST00000487938 C1orf198Q9H425 327 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 HRH3Q9Y5N1 445 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 KCNMB2Q9Y691 235 aa16.03■□□□□ 0.16
VIM-206ENST00000487938 WIPF3A6NGB9 483 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 A6NIZ1 184 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 NUDT21O43809 227 aaKnown RBP16.02■□□□□ 0.16
VIM-206ENST00000487938 B3GALNT1O75752 331 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 SNAPC5O75971 98 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 ISG15P05161 165 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 CD37P11049 281 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 GNALP38405 381 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 RAP1BP61224 184 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 RAP1AP62834 184 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 SMAD4Q13485 552 aaKnown RBP16.02■□□□□ 0.16
VIM-206ENST00000487938 SMAD2Q15796 467 aaKnown RBP16.02■□□□□ 0.16
VIM-206ENST00000487938 ZNF704Q6ZNC4 412 aaPredicted RBP16.02■□□□□ 0.16
VIM-206ENST00000487938 OR1J2Q8NGS2 313 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 SCARB1Q8WTV0 552 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 CCDC107Q8WV48 283 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 FAM46BQ96A09 425 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 MFFQ9GZY8 342 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 CNTD2Q9H8S5 307 aa16.02■□□□□ 0.16
VIM-206ENST00000487938 ANKUB1A6NFN9 424 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 MFSD2BA6NFX1 497 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 SPDEFO95238 335 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 C17orf67Q0P5P2 114 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 MPPED2Q15777 294 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 LY6G6FQ5SQ64 297 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 ATPAF1Q5TC12 328 aaPredicted RBP16.02■□□□□ 0.15
VIM-206ENST00000487938 DNM1P34Q6PK57 102 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 HDDC2Q7Z4H3 204 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 SLC38A9Q8NBW4 561 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 APCDD1LQ8NCL9 501 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 STEAP2Q8NFT2 490 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 MFSD8Q8NHS3 518 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 TTYH1Q9H313 450 aaPredicted RBP16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms