RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RNF39Q9H2S5 420 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SIPA1L3O60292 1781 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 NCR1O76036 304 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 APOBEC1P41238 236 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ERHP84090 104 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 OR52R1Q8NGF1 315 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 WDFY2Q96P53 400 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 FLVCR1Q9Y5Y0 555 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 TCAPO15273 167 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 DEDDO75618 318 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SLCO2B1O94956 709 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SMIM17P0DL12 118 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 FCGR2CP31995 323 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 MRPL19P49406 292 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 FCRLBQ6BAA4 426 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 HTR3DQ70Z44 454 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 IFI44Q8TCB0 444 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ANAPC16Q96DE5 110 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 WDR61Q9GZS3 305 aaKnown RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 VSX1Q9NZR4 365 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 K7ERU9 68 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SEMA4FO95754 770 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 GYPBP06028 91 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 G0S2P27469 103 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SIM1P81133 766 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF787Q6DD87 383 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ZBTB44Q8NCP5 570 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 OR2AK2Q8NG84 335 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 LHX4Q969G2 390 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 CLCF1Q9UBD9 225 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 CACNA1BQ00975 2339 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 PMP2P02689 132 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 OR10P1Q8NGE3 313 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 RAB24Q969Q5 203 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 CMC2Q9NRP2 79 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 STRCQ7RTU9 1775 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ABCA3Q99758 1704 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF354AO60765 605 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 TXNDC12O95881 172 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 SHC1P29353 583 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 VASPP50552 380 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 FAM189BP81408 668 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 XKR7Q5GH72 579 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 B3GNTL1Q67FW5 361 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-209ENST00000472056 CSNK1G1Q9HCP0 422 aa12.22□□□□□ -0.45
COL6A3-209ENST00000472056 LOC102723971A0A1B0GUV8 181 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 FZD6O60353 706 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 HTR6P50406 440 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 RBPJQ06330 500 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 MOB3CQ70IA8 216 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 ZNF107Q9UII5 783 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-209ENST00000472056 RPH3ALQ9UNE2 315 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 SLC35E2P0CK97 266 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 NOVA1P51513 510 aaKnown RBP12.21□□□□□ -0.45
COL6A3-209ENST00000472056 RRADP55042 308 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 OLIG1Q8TAK6 271 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 NAA50Q9GZZ1 169 aaKnown RBP12.21□□□□□ -0.45
COL6A3-209ENST00000472056 POMT2Q9UKY4 750 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 ALS2Q96Q42 1657 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 IGKV6D-21A0A0A0MT36 114 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 CRYM-AS1A6NIL9 109 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 HNF1AP20823 631 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 KIR2DL3P43628 341 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 TTC9Q92623 222 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 ATF6BQ99941 703 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 NXPH2O95156 264 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 AIFM1O95831 613 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 HEXAP06865 529 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 F7P08709 466 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-209ENST00000472056 TCN2P20062 427 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 TCEAL8Q8IYN2 117 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 TMEM130Q8N3G9 435 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 TMEM104Q8NE00 496 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 ARHGAP9Q9BRR9 750 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 BOCQ9BWV1 1114 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 SLC5A6Q9Y289 635 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 PARP14Q460N5 1801 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 ABCD3P28288 659 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 PJVKQ0ZLH3 352 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 SIRT7Q9NRC8 400 aa12.21□□□□□ -0.45
COL6A3-209ENST00000472056 LTBP3Q9NS15 1303 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 A6NDN8 102 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 HSBP1O75506 76 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 CST4P01036 141 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 OR8G3PP0DMU2 310 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 CEBPEQ15744 281 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 OR4E1P0C645 316 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 RPA2P15927 270 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 CBR1P16152 277 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 FGF9P31371 208 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-209ENST00000472056 NPY4RP50391 375 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 ZNF573Q86YE8 665 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 C16orf70Q9BSU1 422 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 FLVCR2Q9UPI3 526 aa12.21□□□□□ -0.46
COL6A3-209ENST00000472056 CCDC187A0A096LP49 1063 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 RNASEK-C17orf49H0YIS7 233 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 AP4M1O00189 453 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ADPRHP54922 357 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 ADAMTSL4Q6UY14 1074 aa12.2□□□□□ -0.46
COL6A3-209ENST00000472056 MFSD4AQ8N468 514 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms