RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DOLPP1Q86YN1 238 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 NECTIN4Q96NY8 510 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 DUSP23Q9BVJ7 150 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 RTL8AQ9BWD3 113 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 CACNA1DQ01668 2161 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 TTC9Q92623 222 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ERGIC1Q969X5 290 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ULBP3Q9BZM4 244 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 ZMAT3Q9HA38 289 aaKnown RBP12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 NUP98P52948 1817 aa12.27□□□□□ -0.44
CCDC88A-204ENST00000413716 KIAA1217Q5T5P2 1943 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 DLX1P56177 255 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 WDR83Q9BRX9 315 aaKnown RBP12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 PLA2G12AQ9BZM1 189 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 C21orf58P58505 322 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 DEFB110Q30KQ9 67 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 C11orf91Q3C1V1 193 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 TMED6Q8WW62 240 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC35B4Q969S0 331 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 CD207Q9UJ71 328 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SPINT3P49223 89 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SSR4P51571 173 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 ALKBH1Q13686 389 aaKnown RBP12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 KIR2DS3Q14952 304 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 CD99L2Q8TCZ2 262 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 MOB3AQ96BX8 217 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM116Q8NCL8 245 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SCAMP4Q969E2 229 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC25A46Q96AG3 418 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 UTP23Q9BRU9 249 aaKnown RBP12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 C11orf68Q9H3H3 251 aaKnown RBP12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 PSENENQ9NZ42 101 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 ENTPD2Q9Y5L3 495 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 PIAS3Q9Y6X2 628 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC5A10A0PJK1 596 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 MS4A18H0YCH9 400 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 ANKRD34CP0C6C1 535 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 EMP1P54849 157 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 TPBGQ13641 420 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 MS4A18Q3C1V0 323 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 OR52L2PQ8NGH6 319 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 C19orf43Q9BQ61 176 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 SFXN1Q9H9B4 322 aa12.27□□□□□ -0.45
CCDC88A-204ENST00000413716 A0A087WV62 115 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 KLF7O75840 302 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 FAM189BP81408 668 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SMAGPQ0VAQ4 97 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 GLIPR1L1Q6UWM5 242 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 MRAP2Q96G30 205 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 RNASE1P07998 156 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 HTR1FP30939 366 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 RPS23P62266 143 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SHHQ15465 462 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF429Q86V71 674 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 GJC3Q8NFK1 279 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 DUSP13Q9UII6 198 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 ALPLP05186 524 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 LMAN2Q12907 356 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 CHST14Q8NCH0 376 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 FUBP1Q96AE4 644 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC17A9Q9BYT1 436 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 TRBV4-1A0A0J9YWV2 114 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 RPS16P62249 146 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 OR1N2Q8NGR9 330 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 C7orf43Q8WVR3 580 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SIGLEC10Q96LC7 697 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 CPMP14384 443 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 CCR9P51686 369 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 BPIFA4PQ86YQ2 179 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 FYTTD1Q96QD9 318 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 NALCNQ8IZF0 1738 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 PHLPP1O60346 1717 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 OPN1LWP04000 364 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 ACOT4Q8N9L9 421 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 MTMR14Q8NCE2 650 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM208Q9BTX3 173 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SPHK2Q9NRA0 654 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 SEMA4FO95754 770 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 ACRP10323 421 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 CD37P11049 281 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 CST6Q15828 149 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 FER1L5A0AVI2 2057 aa12.26□□□□□ -0.45
CCDC88A-204ENST00000413716 EIF1BO60739 113 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 EXOSC7Q15024 291 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 RANBP10Q6VN20 620 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 OLIG1Q8TAK6 271 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CPEB1Q9BZB8 566 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 COCHO43405 550 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 DOK2O60496 412 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CHRM2P08172 466 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 ALOX5APP20292 161 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 DSC1Q08554 894 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SHISA6Q6ZSJ9 500 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 KLRB1Q12918 225 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 AAED1Q7RTV5 226 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC46A1Q96NT5 459 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC30A3Q99726 388 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 MMACHCQ9Y4U1 282 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 ABCA1O95477 2261 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CD40P25942 277 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms