RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SHISA9B4DS77 424 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 MRPL3P09001 348 aaKnown RBP25.42■■□□□ 1.66
USP42-202ENST00000404008 ZNF35P13682 527 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 TBC1D28Q2M2D7 210 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 ELFN2Q5R3F8 820 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 SLC22A25Q6T423 547 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 ZNF704Q6ZNC4 412 aaPredicted RBP25.42■■□□□ 1.66
USP42-202ENST00000404008 SHFQ7M4L6 423 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 TMEM200AQ86VY9 491 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 KBTBD8Q8NFY9 601 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 ST7LQ8TDW4 575 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 POM121L2Q96KW2 1035 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 Q96MT0 163 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 KCNS3Q9BQ31 491 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 ADGRL4Q9HBW9 690 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 PNRC2Q9NPJ4 139 aaKnown RBP25.42■■□□□ 1.66
USP42-202ENST00000404008 HSPE1-MOB4S4R3N1 261 aa25.42■■□□□ 1.66
USP42-202ENST00000404008 ATP6V1G2-DDX39BF2Z307 99 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 CCL2P13500 99 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 PRF1P14222 555 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 HTR5AP47898 357 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 HSPA13P48723 471 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 TMEM154Q6P9G4 183 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 C8orf59Q8N0T1 100 aaPredicted RBP25.41■■□□□ 1.66
USP42-202ENST00000404008 PAQR4Q8N4S7 273 aaPredicted RBP25.41■■□□□ 1.66
USP42-202ENST00000404008 OR10S1Q8NGN2 331 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 OR1J2Q8NGS2 313 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 OR1F12Q8NHA8 337 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 OTOSQ8NHW6 89 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 SMAP2Q8WU79 429 aaPredicted RBP25.41■■□□□ 1.66
USP42-202ENST00000404008 YIPF3Q9GZM5 350 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 ATPIF1Q9UII2 106 aa25.41■■□□□ 1.66
USP42-202ENST00000404008 APCP25054 2843 aa25.4■■□□□ 1.66
USP42-202ENST00000404008 WBP4O75554 376 aaKnown RBP25.4■■□□□ 1.66
USP42-202ENST00000404008 GDI2P50395 445 aaKnown RBP25.4■■□□□ 1.66
USP42-202ENST00000404008 EIF2B1Q14232 305 aaKnown RBP25.4■■□□□ 1.66
USP42-202ENST00000404008 SNCBQ16143 134 aa25.4■■□□□ 1.66
USP42-202ENST00000404008 CDC20BQ86Y33 519 aa25.4■■□□□ 1.66
USP42-202ENST00000404008 ZNF454Q8N9F8 522 aa25.4■■□□□ 1.66
USP42-202ENST00000404008 LILRB1Q8NHL6 650 aaPredicted RBP25.4■■□□□ 1.66
USP42-202ENST00000404008 COQ7Q99807 217 aa25.4■■□□□ 1.66
USP42-202ENST00000404008 RAI1Q7Z5J4 1906 aaPredicted RBP25.39■■□□□ 1.66
USP42-202ENST00000404008 C5orf49A4QMS7 147 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 SNTNA6NMZ2 147 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 MTNR1AP48039 350 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 POU4F2Q12837 409 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 OR51G2Q8NGK0 314 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 CNIH3Q8TBE1 160 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 ABHD6Q9BV23 337 aa25.39■■□□□ 1.65
USP42-202ENST00000404008 SBK2P0C263 348 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 HCCSP53701 268 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 NEUROG1Q92886 237 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 SLAMF6Q96DU3 332 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 AMELYQ99218 206 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 ATF6BQ99941 703 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 RASSF4Q9H2L5 321 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 CDH20Q9HBT6 801 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 DDX28Q9NUL7 540 aaKnown RBP25.38■■□□□ 1.65
USP42-202ENST00000404008 KLHDC2Q9Y2U9 406 aa25.38■■□□□ 1.65
USP42-202ENST00000404008 LYNP07948 512 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 CCNOP22674 350 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 NUDT6P53370 316 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 HGFACQ04756 655 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 ECH1Q13011 328 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 ZNF672Q499Z4 452 aaPredicted RBP25.37■■□□□ 1.65
USP42-202ENST00000404008 SLC7A6Q92536 515 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 RNFT2Q96EX2 444 aa25.37■■□□□ 1.65
USP42-202ENST00000404008 ALOX5APP20292 161 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 ZNF91Q05481 1191 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 SMN1Q16637 294 aaKnown RBP25.36■■□□□ 1.65
USP42-202ENST00000404008 KRTAP27-1Q3LI81 207 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 SLC35F2Q8IXU6 374 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 OR4F15Q8NGB8 312 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 FBLIM1Q8WUP2 373 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 RNF133Q8WVZ7 376 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 LAMP5Q9UJQ1 280 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 POU2F3Q9UKI9 436 aa25.36■■□□□ 1.65
USP42-202ENST00000404008 APOL3O95236 402 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 DBHP09172 617 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 DBTP11182 482 aaKnown RBP25.35■■□□□ 1.65
USP42-202ENST00000404008 NR4A1P22736 598 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 GALK2Q01415 458 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 RSPO1Q2MKA7 263 aaPredicted RBP25.35■■□□□ 1.65
USP42-202ENST00000404008 THAP5Q7Z6K1 395 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 THEM6Q8WUY1 208 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 AKAP1Q92667 903 aaKnown RBP eCLIP25.35■■□□□ 1.65
USP42-202ENST00000404008 MNTQ99583 582 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 ZNF184Q99676 751 aaPredicted RBP25.35■■□□□ 1.65
USP42-202ENST00000404008 ANKRD60Q9BZ19 345 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 PLEKHF2Q9H8W4 249 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 TMEM14AQ9Y6G1 99 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 ATP23Q9Y6H3 246 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 RTTNQ86VV8 2226 aa25.35■■□□□ 1.65
USP42-202ENST00000404008 FLNBO75369 2602 aaKnown RBP25.34■■□□□ 1.65
USP42-202ENST00000404008 ZNF878C9JN71 531 aa25.34■■□□□ 1.65
USP42-202ENST00000404008 ICMTO60725 284 aa25.34■■□□□ 1.65
USP42-202ENST00000404008 PCSK6P29122 969 aa25.34■■□□□ 1.65
USP42-202ENST00000404008 WNT5AP41221 380 aa25.34■■□□□ 1.65
USP42-202ENST00000404008 NKX6-1P78426 367 aaPredicted RBP25.34■■□□□ 1.65
USP42-202ENST00000404008 CDK5R2Q13319 367 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms