RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 UBBP0CG47 229 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 UBCP0CG48 685 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 EFNA3P52797 238 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 RPS27AP62979 156 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 UBA52P62987 128 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 RASGEF1BQ0VAM2 473 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 BIKQ13323 160 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 PAPD4Q6PIY7 484 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 MRGPRX1Q96LB2 322 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 POTEKPQ9BYX7 375 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 COMMD9Q9P000 198 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 GPN3Q9UHW5 284 aaPredicted RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 PURGQ9UJV8 347 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 C5orf51A6NDU8 294 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 MSGN1A6NI15 193 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 SCDO00767 359 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 XKRYO14609 159 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 BCL2L11O43521 198 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 OPN1LWP04000 364 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 RNH1P13489 461 aaKnown RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 AKR1C3P42330 323 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 KCNJ3P48549 501 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 IL13RA1P78552 427 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 FNDC7Q5VTL7 733 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 TMEM92Q6UXU6 159 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 OR13C3Q8NGS6 347 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 NICN1Q9BSH3 213 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 PRMT8Q9NR22 394 aaPredicted RBP18.81■□□□□ 0.6
CTCF-202ENST00000401394 CENPMQ9NSP4 180 aa18.81■□□□□ 0.6
CTCF-202ENST00000401394 OR14I1A6ND48 311 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 AGPAT2O15120 278 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 ADAP1O75689 374 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 HHEXQ03014 270 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 TRAPPC6BQ86SZ2 158 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 ZNF679Q8IYX0 411 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 MRI1Q9BV20 369 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 ID4P47928 161 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 EGR3Q06889 387 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 MPPED2Q15777 294 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 OR10R2Q8NGX6 335 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 GAREM1Q9H706 876 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 CNTD2Q9H8S5 307 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 OR2S2Q9NQN1 319 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 MLXQ9UH92 298 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 PRELID3BQ9Y3B1 194 aa18.8■□□□□ 0.6
CTCF-202ENST00000401394 ZNF98A6NK75 572 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 PAN3Q58A45 887 aaKnown RBP18.79■□□□□ 0.6
CTCF-202ENST00000401394 OR52N4Q8NGI2 321 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 DUSP15Q9H1R2 295 aaPredicted RBP18.79■□□□□ 0.6
CTCF-202ENST00000401394 UBQLN4Q9NRR5 601 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 YBX2Q9Y2T7 364 aaKnown RBP18.79■□□□□ 0.6
CTCF-202ENST00000401394 A0A1W2PP11 408 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 TMEM218A2RU14 115 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 SIGLEC6O43699 453 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 ACTBP60709 375 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 ACTG1P63261 375 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 FGL1Q08830 312 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 ISXQ2M1V0 245 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 DEFB119Q8N690 84 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 C8orf44Q96CB5 159 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 CSAG2Q9Y5P2 127 aa18.79■□□□□ 0.6
CTCF-202ENST00000401394 LOC107986453A0A1B0GWG9 222 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 C9orf170A2RU37 121 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 CD8AP01732 235 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 ZBTB25P24278 435 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 DNASE1L1P49184 302 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PRKXP51817 358 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 HAGHLQ6PII5 290 aaPredicted RBP18.78■□□□□ 0.6
CTCF-202ENST00000401394 ZNF584Q8IVC4 421 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PAQR4Q8N4S7 273 aaPredicted RBP18.78■□□□□ 0.6
CTCF-202ENST00000401394 MARCH1Q8TCQ1 289 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PTPMT1Q8WUK0 201 aaPredicted RBP18.78■□□□□ 0.6
CTCF-202ENST00000401394 C15orf40Q8WUR7 153 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 CCDC107Q8WV48 283 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PRSS37A4D1T9 235 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 H0YIZ8 118 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 CXCR1P25024 350 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 UNC119Q13432 240 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 ELOCQ15369 112 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 HFEQ30201 348 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 SHISA6Q6ZSJ9 500 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 FOXRED2Q8IWF2 684 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 SLC43A2Q8N370 569 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 TMEM229BQ8NBD8 167 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 OR4A4PQ8NGN8 299 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 RNF128Q8TEB7 428 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 FGGYQ96C11 551 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 FBXO17Q96EF6 278 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 C12orf57Q99622 126 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 NUDT9Q9BW91 350 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PARP12Q9H0J9 701 aaKnown RBP18.78■□□□□ 0.6
CTCF-202ENST00000401394 DNTTIP1Q9H147 329 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 GMEB2Q9UKD1 530 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 ZNF175Q9Y473 711 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 SPAG17Q6Q759 2223 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 A0A0D9SG52 128 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 SHISA8B8ZZ34 492 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 GNALP38405 381 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 FUT7Q11130 342 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 SLC9A3R2Q15599 337 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms