RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RAD51DO75771 328 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 LYZL6O75951 148 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 AGFG2O95081 481 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 CGAP01215 116 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 PTHP01270 115 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 APOC1P02654 83 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 CD79AP11912 226 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 IGHV1-2P23083 117 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 GRB2P62993 217 aaKnown RBP12.46□□□□□ -0.41
SKA1-202ENST00000398452 ECH1Q13011 328 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 BLMHQ13867 455 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 PCK2Q16822 640 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 ZNF829Q3KNS6 432 aaPredicted RBP12.46□□□□□ -0.41
SKA1-202ENST00000398452 CDONQ4KMG0 1287 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 OR2G6Q5TZ20 316 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 UBE2UQ5VVX9 321 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 CORO6Q6QEF8 472 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 DEGS2Q6QHC5 323 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 SPATC1Q76KD6 591 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 ZNF627Q7L945 461 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 BHLHA15Q7RTS1 189 aaPredicted RBP12.46□□□□□ -0.41
SKA1-202ENST00000398452 KLBQ86Z14 1044 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 ZNF679Q8IYX0 411 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 HTRA1Q92743 480 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 UFD1Q92890 307 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 NABP1Q96AH0 204 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 OR8B4Q96RC9 309 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 MGLLQ99685 303 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 HDHD2Q9H0R4 259 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 BABAM2Q9NXR7 383 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 ELOVL5Q9NYP7 299 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 LHFPL6Q9Y693 200 aa12.46□□□□□ -0.41
SKA1-202ENST00000398452 SHANK1Q9Y566 2161 aa12.46□□□□□ -0.42
SKA1-202ENST00000398452 RELNP78509 3460 aa12.46□□□□□ -0.42
SKA1-202ENST00000398452 ZGRF1Q86YA3 2104 aa12.46□□□□□ -0.42
SKA1-202ENST00000398452 USP9YO00507 2555 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 IQCMA0A1B0GVH7 501 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 PSMD9O00233 223 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 DOK2O60496 412 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 WNT11O96014 354 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 SCG5P05408 212 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 LCKP06239 509 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ITGA5P08648 1049 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ZNF32P17041 273 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 JUNBP17275 347 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 PCMT1P22061 227 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 PAX7P23759 505 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 CHRNB4P30926 498 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 OR12D2P58182 307 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 MLLT11Q13015 90 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 ENDOGQ14249 297 aaKnown RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 TBRG1Q3YBR2 411 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ARMCX4Q5H9R4 360 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ELFN2Q5R3F8 820 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 LRRN1Q6UXK5 716 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 RHOUQ7L0Q8 258 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 VASH1Q7L8A9 365 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 CXorf67Q86X51 503 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 MED12LQ86YW9 2145 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 SKA3Q8IX90 412 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 C17orf78Q8N4C9 275 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ZNF433Q8N7K0 673 aaPredicted RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 SPTSSAQ969W0 71 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 ATF6BQ99941 703 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 USB1Q9BQ65 265 aaKnown RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 ELOVL3Q9HB03 270 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 MOV10Q9HCE1 1003 aaKnown RBP12.45□□□□□ -0.42
SKA1-202ENST00000398452 ISYNA1Q9NPH2 558 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 OBP2BQ9NPH6 170 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 BATF3Q9NR55 127 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 FBXL3Q9UKT7 428 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 GTF2A1LQ9UNN4 478 aa12.45□□□□□ -0.42
SKA1-202ENST00000398452 DOCK7Q96N67 2140 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 CCDC160A6NGH7 325 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 RER1O15258 196 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 RPP14O95059 124 aaKnown RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 AVPP01185 164 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 COX5AP20674 150 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 BDH1Q02338 343 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 ROM1Q03395 351 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 RAB35Q15286 201 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 GSG1Q2KHT4 349 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 SLC25A35Q3KQZ1 300 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 SFRP5Q5T4F7 317 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 SYT6Q5T7P8 510 aaPredicted RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 SSX6Q7RTT6 188 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 GABRG1Q8N1C3 465 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 STEAP2Q8NFT2 490 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 ST7LQ8TDW4 575 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 RNF133Q8WVZ7 376 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 BCL2L2Q92843 193 aaPredicted RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 MUL1Q969V5 352 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 MUCL1Q96DR8 90 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 COG8Q96MW5 612 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 OR5M11Q96RB7 305 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 SP140LQ9H930 580 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 ISG20L2Q9H9L3 353 aaKnown RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 SLCO1C1Q9NYB5 712 aa12.44□□□□□ -0.42
SKA1-202ENST00000398452 ERRFI1Q9UJM3 462 aaPredicted RBP12.44□□□□□ -0.42
SKA1-202ENST00000398452 KLHDC2Q9Y2U9 406 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms