RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RAB7AP51149 207 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ST3GAL2Q16842 350 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 SLC39A7Q92504 469 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 DUSP22Q9NRW4 184 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 HS3ST1O14792 307 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 CCKARP32238 428 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 XKR7Q5GH72 579 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 ABHD17BQ5VST6 288 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 MFSD9Q8NBP5 474 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF740Q8NDX6 193 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 CASD1Q96PB1 797 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 ARHGAP9Q9BRR9 750 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 CPEB1Q9BZB8 566 aaKnown RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 XRCC2O43543 280 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GALR3O60755 368 aaPredicted RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 NXPH2O95156 264 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GPNMBQ14956 572 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 SLC25A35Q3KQZ1 300 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM207Q6UWW9 146 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GLDNQ6ZMI3 551 aaPredicted RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 OR5K2Q8NHB8 316 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 DCBLD2Q96PD2 775 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 MAGT1Q9H0U3 335 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 LINC00597Q9H2U6 94 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 DCAF16Q9NXF7 216 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 COA3Q9Y2R0 106 aaPredicted RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 TMED7-TICAM2A0A0A6YYA0 188 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 IGKV6-21A0A0C4DH24 114 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 SLC25A4P12235 298 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 EPHA2P29317 976 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 NOVA1P51513 510 aaKnown RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 Q1RN00 199 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 TMED7Q9Y3B3 224 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 C3P01024 1663 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GDF1P27539 372 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GALR1P47211 349 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 ARG2P78540 354 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 MAT1AQ00266 395 aaKnown RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 C12orf76Q8N812 135 aaPredicted RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 CORO2AQ92828 525 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 NMES1Q9C002 83 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 HSFX1Q9UBD0 423 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 GOLT1BQ9Y3E0 138 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 BLACEA4D250 179 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 DSC1Q08554 894 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 EMG1Q92979 244 aaKnown RBP10.84□□□□□ -0.67
SYNPO-202ENST00000394243 IL22RA2Q969J5 263 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 CMTM3Q96MX0 182 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 PBX4Q9BYU1 374 aa10.84□□□□□ -0.67
SYNPO-202ENST00000394243 SLC25A6P12236 298 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 NTSR1P30989 418 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 TGFBR3Q03167 851 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 C19orf35Q6ZS72 473 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SHDQ96IW2 340 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 MEGF10Q96KG7 1140 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SLC25A37Q9NYZ2 338 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 CA14Q9ULX7 337 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 TRAPPC4Q9Y296 219 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 MRPL33O75394 65 aaKnown RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 UTS2O95399 124 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 RRASP10301 218 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 VRK3Q8IV63 474 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SLC46A1Q96NT5 459 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 GHRLQ9UBU3 117 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 LOC107986453A0A1B0GWG9 222 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 H0YGG7 62 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 HBQ1P09105 142 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 HIST1H1CP16403 213 aaKnown RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 POU3F3P20264 500 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 PMP22Q01453 160 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 TMEM40Q8WWA1 233 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 ISG20Q96AZ6 181 aaKnown RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 MS4A8Q9BY19 250 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 A6NCN8 305 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 M0QZQ0 153 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 DUSP3P51452 185 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 RAB38P57729 211 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 ERVFC1-1P60608 527 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 ASTLQ6HA08 431 aaPredicted RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 PRR27Q6MZM9 219 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 PARS2Q7L3T8 475 aaKnown RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SLC38A9Q8NBW4 561 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 OR10P1Q8NGE3 313 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SMIM19Q96E16 107 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 WDR83Q9BRX9 315 aaKnown RBP10.83□□□□□ -0.68
SYNPO-202ENST00000394243 DLL4Q9NR61 685 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 CTSFQ9UBX1 484 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 NUMBLQ9Y6R0 609 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 A0A1W2PPH5 198 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 FAM27D1Q5T7N8 215 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 AFMIDQ63HM1 303 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SYT13Q7L8C5 426 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 PGBD5Q8N414 524 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 NHLRC2Q8NBF2 726 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 SMIM4Q8WVI0 70 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 FAM3CQ92520 227 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 CLSTN3Q9BQT9 956 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 LHX3Q9UBR4 397 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 FBXO4Q9UKT5 387 aa10.83□□□□□ -0.68
SYNPO-202ENST00000394243 DBX1A6NMT0 343 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms