RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 V9GY05 133 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 LINC00862A6NCI5 91 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 KLRC4-KLRK1H3BQV0 150 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 XKRYO14609 159 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 TXNDC12O95881 172 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 IFNA7P01567 189 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 C4BPBP20851 252 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 DNASE1P24855 282 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 MAPK3P27361 379 aaPredicted RBP11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 PSMB10P40306 273 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 PUDPQ08623 228 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 IKZF1Q13422 519 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 DEFB109BQ30KR1 87 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 SLC25A25Q6KCM7 469 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 FAM122BQ7Z309 247 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 FAM220AQ7Z4H9 259 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 CCDC28AQ8IWP9 274 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 ELMOD2Q8IZ81 293 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 ZNF680Q8NEM1 530 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 RPS4Y2Q8TD47 263 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 FCAMRQ8WWV6 532 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 RAB40AQ8WXH6 277 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 MARVELD3Q96A59 401 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 DDOQ99489 341 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 SMAD5Q99717 465 aaKnown RBP11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 C20orf85Q9H1P6 137 aa11.74□□□□□ -0.53
SQSTM1-201ENST00000360718 ANKRD11Q6UB99 2663 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 ZNF593O00488 134 aaPredicted RBP11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 SELENOFO60613 162 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 KRT33AO76009 404 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 TGM6O95932 706 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 RENP00797 406 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 SP1P08047 785 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 CALCBP10092 127 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 CXCL3P19876 107 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 PSMB1P20618 241 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 RFC3P40938 356 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 ZP4Q12836 540 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 CAMK2DQ13557 499 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 METTL11BQ5VVY1 283 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 LEG1Q6P5S2 330 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 ESPNLQ6ZVH7 1005 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 YRDCQ86U90 279 aaKnown RBP11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 SULF2Q8IWU5 870 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 MDS2Q8NDY4 140 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 HAS2Q92819 552 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 SORCS2Q96PQ0 1159 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 COPS3Q9UNS2 423 aa11.73□□□□□ -0.53
SQSTM1-201ENST00000360718 A0A1W2PNR3 127 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 OR6C68A6NDL8 312 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 LEUTXA8MZ59 168 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 SULT2B1O00204 365 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 RPL27P61353 136 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 RAC1P63000 192 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 SLC35A1P78382 337 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ELFN2Q5R3F8 820 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 HES5Q5TA89 166 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 SLC16A9Q7RTY1 509 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 OR8H3Q8N146 312 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 OR6V1Q8N148 313 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 PIAS4Q8N2W9 510 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ZNF433Q8N7K0 673 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 DERL3Q96Q80 235 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TSPAN32Q96QS1 320 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TXNIPQ9H3M7 391 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TCF7L1Q9HCS4 588 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 HRASLSQ9HDD0 168 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 DLL4Q9NR61 685 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ZNF346Q9UL40 294 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TMA7Q9Y2S6 64 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TNRC6AQ8NDV7 1962 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 NME2P1O60361 137 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 KHDRBS3O75525 346 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TPPPO94811 219 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 AKR7A3O95154 331 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 PLGP00747 810 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 IGF2RP11717 2491 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 NME2P22392 152 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 SLC25A1P53007 311 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 PLGLB1Q02325 96 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TMPPEQ6ZT21 453 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 RFPL4BQ6ZWI9 263 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 FCRLAQ7L513 359 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 IZUMO1Q8IYV9 350 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 TMEM178AQ8NBL3 297 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 OR11H4Q8NGC9 324 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 MIB2Q96AX9 1013 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ADAD1Q96M93 576 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 SFXN2Q96NB2 322 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ALG12Q9BV10 488 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 ZNF436Q9C0F3 470 aaPredicted RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 AUNIPQ9H7T9 357 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 NKIRAS2Q9NYR9 191 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 EIF3KQ9UBQ5 218 aaKnown RBP11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 RCE1Q9Y256 329 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 MSRB2Q9Y3D2 182 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 NPTNQ9Y639 398 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 KCNMB2Q9Y691 235 aa11.72□□□□□ -0.53
SQSTM1-201ENST00000360718 NPIPA5E9PKD4 350 aa11.71□□□□□ -0.53
SQSTM1-201ENST00000360718 MS4A18H0YCH9 400 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms