RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PGCP20142 388 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CSRP1P21291 193 aaKnown RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PRKXP51817 358 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 GLO1Q04760 184 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PAPD4Q6PIY7 484 aaKnown RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FJX1Q86VR8 437 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 ARMC10Q8N2F6 343 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 LHFPL5Q8TAF8 219 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 LRRC46Q96FV0 321 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 ARL5BQ96KC2 179 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 SLC46A1Q96NT5 459 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FBRSQ9HAH7 460 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 C12orf10Q9HB07 376 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 HHLA2Q9UM44 414 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 A0A1W2PPC1 479 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PMS2P2O95744 297 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 TXNDC12O95881 172 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PMP2P02689 132 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CTRB1P17538 263 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CAPZBP47756 277 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FBXW4P57775 412 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 IL13RA1P78552 427 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 IGLV3-21P80748 117 aaPredicted RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 POU3F1Q03052 451 aaPredicted RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 EMC4Q5J8M3 183 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CTRB2Q6GPI1 263 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 TMEM88Q6PEY1 159 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 COX15Q7KZN9 410 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 TMPRSS9Q7Z410 1059 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 C9orf40Q8IXQ3 194 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 ZNF101Q8IZC7 436 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 OR13C9Q8NGT0 318 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 MRPS24Q96EL2 167 aaKnown RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 AIFM2Q9BRQ8 373 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 SELENOIQ9C0D9 397 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 LAT2Q9GZY6 243 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PTGES2Q9H7Z7 377 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 OR52A1Q9UKL2 312 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 POLR1DQ9Y2S0 133 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 RALGAPA1Q6GYQ0 2036 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 IGKV1D-43A0A0B4J1Z2 117 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FAM74A7A6NL05 159 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 OR2AT4A6NND4 320 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 H2BFMP0C1H6 154 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 MC2RQ01718 297 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 PPP1R1AQ13522 171 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FAM74A3Q4VXF1 159 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CARD17Q5XLA6 110 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 KIAA0895LQ68EN5 471 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 RNF144BQ7Z419 303 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 UTP23Q9BRU9 249 aaKnown RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 ADAT1Q9BUB4 502 aaKnown RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 FOXQ1Q9C009 403 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 CST11Q9H112 138 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 DUSP15Q9H1R2 295 aaPredicted RBP10.88□□□□□ -0.67
CLIP3-201ENST00000360535 IFT46Q9NQC8 304 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 ASF1BQ9NVP2 202 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 VSIG4Q9Y279 399 aa10.88□□□□□ -0.67
CLIP3-201ENST00000360535 A8MXK9 166 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 NPIPA5E9PKD4 350 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 PHYHO14832 338 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 IFNA6P05013 189 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ICAM2P13598 275 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 DRD1P21728 446 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ABCD3P28288 659 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 BLKP51451 505 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 EFNA3P52797 238 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ZNF273Q14593 569 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 UBXN2BQ14CS0 331 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 FAM122CQ6P4D5 195 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ADGRE4PQ86SQ3 457 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 FOXRED2Q8IWF2 684 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 OR52N4Q8NGI2 321 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ADAM19Q9H013 955 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 CLEC1BQ9P126 229 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 NPIPA1Q9UND3 350 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 HRH3Q9Y5N1 445 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ITGB2P05107 769 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 FGF2P09038 288 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 MPGP29372 298 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 HRH1P35367 487 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 CCINQ13939 588 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 WDFY1Q8IWB7 410 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 ADAD2Q8NCV1 583 aaKnown RBP10.87□□□□□ -0.67
CLIP3-201ENST00000360535 BPIFCQ8NFQ6 507 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 OR52N5Q8NH56 324 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 TXNIPQ9H3M7 391 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 CNTD2Q9H8S5 307 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 LANCL2Q9NS86 450 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 COPS7AQ9UBW8 275 aa10.87□□□□□ -0.67
CLIP3-201ENST00000360535 OR6C65A6NJZ3 312 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 RHPN2P1A8MT19 583 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 DDAH2O95865 285 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 IL32P24001 234 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 OR1D5P58170 312 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 IKZF1Q13422 519 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 SLC29A4Q7RTT9 530 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 OR13C8Q8NGS7 320 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 ZNF721Q8TF20 911 aa10.86□□□□□ -0.67
CLIP3-201ENST00000360535 S1PR5Q9H228 398 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms