RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 VHLP40337 213 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 HTR5AP47898 357 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 ISL1P61371 349 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 HGFACQ04756 655 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 EIF2B1Q14232 305 aaKnown RBP19.17■□□□□ 0.66
SHMT1-203ENST00000354098 MAD2L1BPQ15013 274 aaPredicted RBP19.17■□□□□ 0.66
SHMT1-203ENST00000354098 RAB35Q15286 201 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 MEDAGQ5VYS4 303 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 IL17RDQ8NFM7 739 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 OR1F12Q8NHA8 337 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 ST7LQ8TDW4 575 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 RFKQ969G6 155 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 AMELYQ99218 206 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 KCNS3Q9BQ31 491 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 ADGRL4Q9HBW9 690 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 HAO2Q9NYQ3 351 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 WARS2Q9UGM6 360 aaKnown RBP19.17■□□□□ 0.66
SHMT1-203ENST00000354098 UNC79Q9P2D8 2635 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 WBP4O75554 376 aaKnown RBP19.17■□□□□ 0.66
SHMT1-203ENST00000354098 APOL3O95236 402 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 TBC1D28Q2M2D7 210 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 USP51Q70EK9 711 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 SLC16A9Q7RTY1 509 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 OR51G2Q8NGK0 314 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 OTOSQ8NHW6 89 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 CNIH3Q8TBE1 160 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 C1orf198Q9H425 327 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 CLN6Q9NWW5 311 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 KLHDC2Q9Y2U9 406 aa19.17■□□□□ 0.66
SHMT1-203ENST00000354098 DBHP09172 617 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 GDI2P50395 445 aaKnown RBP19.16■□□□□ 0.66
SHMT1-203ENST00000354098 NUDT6P53370 316 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 IL18R1Q13478 541 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 SMN1Q16637 294 aaKnown RBP19.16■□□□□ 0.66
SHMT1-203ENST00000354098 RSPO1Q2MKA7 263 aaPredicted RBP19.16■□□□□ 0.66
SHMT1-203ENST00000354098 KRT80Q6KB66 452 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 SPATC1Q76KD6 591 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 SHFQ7M4L6 423 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 AKAP1Q92667 903 aaKnown RBP eCLIP19.16■□□□□ 0.66
SHMT1-203ENST00000354098 CNN2Q99439 309 aaKnown RBP19.16■□□□□ 0.66
SHMT1-203ENST00000354098 ABHD6Q9BV23 337 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 PLEKHF2Q9H8W4 249 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 AMBNQ9NP70 447 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 POU2F3Q9UKI9 436 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 ATP23Q9Y6H3 246 aa19.16■□□□□ 0.66
SHMT1-203ENST00000354098 FLNBO75369 2602 aaKnown RBP19.15■□□□□ 0.66
SHMT1-203ENST00000354098 COX5BP10606 129 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 ZNF672Q499Z4 452 aaPredicted RBP19.15■□□□□ 0.66
SHMT1-203ENST00000354098 SETD9Q8NE22 299 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 THEM6Q8WUY1 208 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 SLAMF6Q96DU3 332 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 HDHD2Q9H0R4 259 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 CDH20Q9HBT6 801 aa19.15■□□□□ 0.66
SHMT1-203ENST00000354098 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHMT1-203ENST00000354098 HEATR1Q9H583 2144 aaKnown RBP19.15■□□□□ 0.66
SHMT1-203ENST00000354098 E7EQL1 145 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 SBK2P0C263 348 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 WNT5AP41221 380 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 MTNR1AP48039 350 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 C8orf59Q8N0T1 100 aaPredicted RBP19.14■□□□□ 0.66
SHMT1-203ENST00000354098 OR1J2Q8NGS2 313 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 NRGNQ92686 78 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 Q96MT0 163 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 ATF6BQ99941 703 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 YIPF3Q9GZM5 350 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 OR51B6Q9H340 312 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 CENPMQ9NSP4 180 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 CISD1Q9NZ45 108 aaKnown RBP19.14■□□□□ 0.66
SHMT1-203ENST00000354098 COPS3Q9UNS2 423 aa19.14■□□□□ 0.66
SHMT1-203ENST00000354098 RTTNQ86VV8 2226 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 FAM157BP0CG42 384 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 ALOX5APP20292 161 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 NR4A1P22736 598 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 TMED1Q13445 227 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 RFLNBQ8N5W9 214 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 OR4F15Q8NGB8 312 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 RNFT2Q96EX2 444 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 COQ7Q99807 217 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 UBTD1Q9HAC8 227 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 LAMP5Q9UJQ1 280 aa19.14■□□□□ 0.65
SHMT1-203ENST00000354098 ROS1P08922 2347 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 LYNP07948 512 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 GALK2Q01415 458 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 ZNF91Q05481 1191 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 SNCBQ16143 134 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 SLC35F2Q8IXU6 374 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 ZNF101Q8IZC7 436 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 ZNF454Q8N9F8 522 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 TTTY10Q9BZA0 68 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 LIME1Q9H400 295 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 DDX28Q9NUL7 540 aaKnown RBP19.13■□□□□ 0.65
SHMT1-203ENST00000354098 HSPE1-MOB4S4R3N1 261 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 LRBAP50851 2863 aa19.13■□□□□ 0.65
SHMT1-203ENST00000354098 ATP6V1E1P36543 226 aa19.12■□□□□ 0.65
SHMT1-203ENST00000354098 NKX6-1P78426 367 aaPredicted RBP19.12■□□□□ 0.65
SHMT1-203ENST00000354098 CDK5R2Q13319 367 aa19.12■□□□□ 0.65
SHMT1-203ENST00000354098 SNTB2Q13425 540 aaKnown RBP19.12■□□□□ 0.65
SHMT1-203ENST00000354098 KRTAP27-1Q3LI81 207 aa19.12■□□□□ 0.65
SHMT1-203ENST00000354098 LAIR2Q6ISS4 152 aa19.12■□□□□ 0.65
SHMT1-203ENST00000354098 VHLLQ6RSH7 139 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms