RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CAPNS1P04632 268 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 DUSP1P28562 367 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 RAB9AP51151 201 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 GK3PQ14409 553 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 RPEL1Q2QD12 228 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 PCSK4Q6UW60 755 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 CD300LGQ6UXG3 332 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR4K5Q8NGD3 323 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR5D16Q8NGK9 328 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 STK35Q8TDR2 534 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 PTP4A1Q93096 173 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SF3B5Q9BWJ5 86 aaKnown RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 REG4Q9BYZ8 158 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SNTG1Q9NSN8 517 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SEC14L4Q9UDX3 406 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 AQP7P3A6NL99 342 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 H0YIV9 168 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SIRPB1O00241 398 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 KCNAB3O43448 404 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SCGB1D2O95969 90 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 GSCP56915 257 aaPredicted RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SRSF4Q08170 494 aaKnown RBP7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OXA1LQ15070 435 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 ZBED5Q49AG3 693 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SLC22A6Q4U2R8 563 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 RNFT1Q5M7Z0 435 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 Q6ZS92 163 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SPARTQ8N0X7 666 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR52L2PQ8NGH6 319 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 CHCHD6Q9BRQ6 235 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 OR11A1Q9GZK7 315 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 SPATA2Q9UM82 520 aa7.51□□□□□ -1.21
HMGB1-203ENST00000341423 DNPH1O43598 174 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 LAMP1P11279 417 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GATA3P23771 443 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ARF6P62330 175 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 S100A12P80511 92 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF678Q5SXM1 525 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 TMEM135Q86UB9 458 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 PQLC1Q8N2U9 271 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 KHSRPQ92945 711 aaKnown RBP eCLIP7.5□□□□□ -1.212e-8■□□□□ 8.9
HMGB1-203ENST00000341423 RAX2Q96IS3 184 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 RBM4BQ9BQ04 359 aaKnown RBP7.5□□□□□ -1.21
HMGB1-203ENST00000341423 OR6C3Q9NZP0 311 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ST6GALNAC2Q9UJ37 374 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 OR2W5A6NFC9 320 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 TVP23AA6NH52 213 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 CSF2RBP32927 897 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GNG3P63215 75 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 DGCR6Q14129 220 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GPNMBQ14956 572 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 C4orf46Q504U0 113 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 C6orf136Q5SQH8 315 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SLC25A42Q86VD7 318 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 TMEM99Q8N816 258 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 MCFD2Q8NI22 146 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 CMBLQ96DG6 245 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SGPP1Q9BX95 441 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 FAM60AQ9NP50 221 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 PEMTQ9UBM1 199 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 RHBDD3Q9Y3P4 386 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SCN11AQ9UI33 1791 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 RNASEK-C17orf49H0YIS7 233 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 UBOX5O94941 541 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GMPRP36959 345 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GINS1Q14691 196 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GNMTQ14749 295 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 TSEN54Q7Z6J9 526 aaKnown RBP7.5□□□□□ -1.21
HMGB1-203ENST00000341423 VTCN1Q7Z7D3 282 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 MFSD4AQ8N468 514 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 FAM71CQ8NEG0 241 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF519Q8TB69 540 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ENKURQ8TC29 256 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SLC7A6Q92536 515 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 NDFIP1Q9BT67 221 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ZNF703Q9H7S9 590 aaPredicted RBP7.5□□□□□ -1.21
HMGB1-203ENST00000341423 GPN1Q9HCN4 374 aaPredicted RBP7.5□□□□□ -1.21
HMGB1-203ENST00000341423 RLIMQ9NVW2 624 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 CES1P1Q9UKY3 287 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 AP4S1Q9Y587 144 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 M0QZK8 103 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 PROCP04070 461 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 TGM1P22735 817 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 CASP3P42574 277 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ZIK1Q3SY52 487 aaPredicted RBP7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SCGB2B2Q4G0G5 96 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 CLEC17AQ6ZS10 378 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 WDFY1Q8IWB7 410 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 OR13A1Q8NGR1 328 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SSMEM1Q8WWF3 244 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 ANKRD19PQ9H560 264 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 RHBDL2Q9NX52 303 aa7.5□□□□□ -1.21
HMGB1-203ENST00000341423 SERPINA2P20848 420 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 TUBG1P23258 451 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ARRB2P32121 409 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 UQCRFS1P47985 274 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 WNT7BP56706 349 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 P2RY14Q15391 338 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 BCL2A1Q16548 175 aa7.49□□□□□ -1.21
HMGB1-203ENST00000341423 ADGRD1Q6QNK2 874 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms