RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 C12orf49Q9H741 205 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 BCO1Q9HAY6 547 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 GPR35Q9HC97 309 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 NOX4Q9NPH5 578 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 B3GAT2Q9NPZ5 323 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 AKIP1Q9NQ31 210 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 ZNF71Q9NQZ8 489 aaPredicted RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 B3GNT3Q9Y2A9 372 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 N6AMT1Q9Y5N5 214 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 PRRC2CQ9Y520 2896 aaKnown RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 MED12LQ86YW9 2145 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 DOCK7Q96N67 2140 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SPENQ96T58 3664 aaKnown RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 A0A1B0GVC2 190 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TMEM269A0A1B0GVZ9 245 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 C1QTNF9BB2RNN3 333 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 ZNF879B4DU55 563 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TAF4O00268 1085 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 AQP7O14520 342 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 RRP8O43159 456 aaKnown RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 GPRIN2O60269 458 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 LMX1BO60663 402 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TMCC2O75069 709 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 CD1AP06126 327 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 YES1P07947 543 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 UCHL1P09936 223 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 FAM87AP0C7U9 286 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 C1QTNF9P0C862 333 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SLC2A2P11168 524 aaPredicted RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 SOX6P35712 828 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 ZNF84P51523 738 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SH3BGRP55822 239 aaPredicted RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 MRPS34P82930 218 aaKnown RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 GALK2Q01415 458 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 MADCAM1Q13477 382 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TRAM1Q15629 374 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SLC25A35Q3KQZ1 300 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 FAM27BQ5VT28 67 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 FDX2Q6P4F2 183 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 KLHL24Q6TFL4 600 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 UNQ9370/PRO34162Q6UXP9 181 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 ADGRE4PQ86SQ3 457 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 NAA40Q86UY6 237 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 SNX29P2Q8IUI4 249 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 MCEMP1Q8IX19 187 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 CPT1CQ8TCG5 803 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 DERL3Q96Q80 235 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TRIB1Q96RU8 372 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 FOXB1Q99853 325 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 KCNN2Q9H2S1 579 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SLCO5A1Q9H2Y9 848 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 MMP27Q9H306 513 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SMURF1Q9HCE7 757 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 G6PC2Q9NQR9 355 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 TMEM38BQ9NVV0 291 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 FAM206AQ9NX38 181 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 PAQR5Q9NXK6 330 aaPredicted RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 EMC3Q9P0I2 261 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 CLCF1Q9UBD9 225 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 DKK4Q9UBT3 224 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 PRSS50Q9UI38 385 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 SLC5A6Q9Y289 635 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 R4GMQ9 66 aa3.64□□□□□ -1.83
MCF2-201ENST00000338585 MAP1BP46821 2468 aaKnown RBP3.64□□□□□ -1.83
MCF2-201ENST00000338585 ATMQ13315 3056 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 TRAV8-7A0A075B6U6 113 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 A0A0B4J203 849 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 A0A0G2JK05 382 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 TRBV5-5A0A0J9YX44 114 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 TMEM212A6NML5 194 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 ZNF724A8MTY0 619 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 ZNF878C9JN71 531 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 E9PLN8 166 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 LOC110117498-PIK3R3F6TDL0 507 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 P2RY10O00398 339 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 RGS5O15539 181 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 ZNF254O75437 659 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 GATBO75879 557 aaKnown RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 KRT33AO76009 404 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 SERPINA3P01011 423 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 TTRP02766 147 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 ADRB1P08588 477 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 DBHP09172 617 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 OCM2P0CE71 109 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 AGTR1P30556 359 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 GUCA1AP43080 201 aaPredicted RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 ID4P47928 161 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 MTNR1BP49286 362 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 CCR9P51686 369 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 LSM6P62312 80 aaKnown RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 CXADRP78310 365 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 ARF1P84077 181 aaKnown RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 FAPQ12884 760 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 MRPL28Q13084 256 aaKnown RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 RNPS1Q15287 305 aaKnown RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 INAQ16352 499 aa3.63□□□□□ -1.83
MCF2-201ENST00000338585 RSPO1Q2MKA7 263 aaPredicted RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 CCDC92Q53HC0 331 aaPredicted RBP3.63□□□□□ -1.83
MCF2-201ENST00000338585 YIF1BQ5BJH7 314 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms