RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 COX5BP10606 129 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 CTLA4P16410 223 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 FPR3P25089 353 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 NOS3P29474 1203 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 RRM2P31350 389 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 WNT5AP41221 380 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 CENPAP49450 140 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 ENDOGQ14249 297 aaKnown RBP10.59□□□□□ -0.71
SS18-225ENST00000585121 RFX4Q33E94 735 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 MTX3Q5HYI7 312 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 ELFN2Q5R3F8 820 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 PGM2L1Q6PCE3 622 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 THSD4Q6ZMP0 1018 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 ABHD4Q8TB40 342 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 GNPDA2Q8TDQ7 276 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 POP5Q969H6 163 aaKnown RBP10.59□□□□□ -0.71
SS18-225ENST00000585121 C4orf45Q96LM5 186 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 ERMAPQ96PL5 475 aaPredicted RBP10.59□□□□□ -0.71
SS18-225ENST00000585121 SNX18Q96RF0 628 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 FUZQ9BT04 418 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 SYT4Q9H2B2 425 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 MUC13Q9H3R2 512 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 NKIRAS2Q9NYR9 191 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 ACTR3BQ9P1U1 418 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 COA3Q9Y2R0 106 aaPredicted RBP10.59□□□□□ -0.71
SS18-225ENST00000585121 POLR1DQ9Y2S0 133 aa10.59□□□□□ -0.71
SS18-225ENST00000585121 LRP5LA4QPB2 252 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 H3BSA7 217 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 IMPA2O14732 288 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 GSC2O15499 205 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 PPIHO43447 177 aaKnown RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 DOK2O60496 412 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LILRA1O75019 489 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 PPP1R3DO95685 299 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ABHD16AO95870 558 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 TXNDC12O95881 172 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 RENP00797 406 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 FAM157CP0CG43 387 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 GSTM3P21266 225 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 TUBG1P23258 451 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 COL8A2P25067 703 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LIPAP38571 399 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 HTR5AP47898 357 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ZNF81P51508 661 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 PPP1CBP62140 327 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LSM6P62312 80 aaKnown RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 GLO1Q04760 184 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 AQP6Q13520 282 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 DNAL1Q4LDG9 190 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 SPATA46Q5T0L3 261 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 MBNL2Q5VZF2 373 aaKnown RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 CYP2R1Q6VVX0 501 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ZER1Q7Z7L7 766 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LINC00471Q8N535 108 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LINC01356Q8N9X3 169 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 SLC25A40Q8TBP6 338 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 RAB3IPQ96QF0 476 aaPredicted RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 IFT27Q9BW83 186 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 NUAK2Q9H093 628 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 OR52D1Q9H346 318 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 TUBG2Q9NRH3 451 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 CYSLTR2Q9NS75 346 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 PLEK2Q9NYT0 353 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ATRQ13535 2644 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 CHD3Q12873 2000 aaKnown RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 IDH3BO43837 385 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 SCG5P05408 212 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 MAGEB1P43366 347 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 CCL8P80075 99 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ZMAT1Q5H9K5 638 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 FAM209AQ5JX71 171 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 LEG1Q6P5S2 330 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 RINLQ6ZS11 566 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ZNF101Q8IZC7 436 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 NPEPL1Q8NDH3 523 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 KLF14Q8TD94 323 aaPredicted RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 MARS2Q96GW9 593 aaKnown RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 COG8Q96MW5 612 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 GPA33Q99795 319 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 OR2J1Q9GZK6 312 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 EGLN1Q9GZT9 426 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 ZNF275Q9NSD4 429 aaPredicted RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 CGGBP1Q9UFW8 167 aaPredicted RBP10.58□□□□□ -0.72
SS18-225ENST00000585121 GRIP1Q9Y3R0 1128 aa10.58□□□□□ -0.72
SS18-225ENST00000585121 IGHV1-69-2A0A0G2JMI3 117 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 TNFRSF11BO00300 401 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 ARPC3O15145 178 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 TIMM8AO60220 97 aaPredicted RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 ICMTO60725 284 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 NCR1O76036 304 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 PCMT1P22061 227 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 MPV17P39210 176 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 CDKN2AP42771 156 aaKnown RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 TSPAN31Q12999 210 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 CCNIQ14094 377 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 TRIP10Q15642 601 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 TSTQ16762 297 aaKnown RBP10.57□□□□□ -0.72
SS18-225ENST00000585121 SLC36A3Q495N2 470 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 RPL13AP3Q6NVV1 102 aa10.57□□□□□ -0.72
SS18-225ENST00000585121 C1orf94Q6P1W5 598 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms