RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 GLYATL1P3A0A0U1RQE8 302 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 GCM2O75603 506 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 CCNKO75909 580 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 YIF1AO95070 293 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 APCSP02743 223 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 PABPC4LP0CB38 370 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 OR5H8P0DN80 308 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 TNNI1P19237 187 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 WARSP23381 471 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 DTYMKP23919 212 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 F2RP25116 425 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 CEACAM3P40198 252 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 SLC11A1P49279 550 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 CCNA1P78396 465 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 HMGN5P82970 282 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 SLC25A11Q02978 314 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 ORMDL2Q53FV1 153 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 RNASEKQ6P5S7 137 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 SASS6Q6UVJ0 657 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 OSR2Q8N2R0 312 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 OR8U1Q8NH10 309 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 KCNG3Q8TAE7 436 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 NTAN1Q96AB6 310 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 RASD2Q96D21 266 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 CAMK2N2Q96S95 79 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 DOK1Q99704 481 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 RNF5Q99942 180 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 CCDC77Q9BR77 488 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 FGF20Q9NP95 211 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 SAMSN1Q9NSI8 373 aaKnown RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 PSMC3IPQ9P2W1 217 aaPredicted RBP2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 STARD10Q9Y365 291 aa2.39□□□□□ -2.03
SMCHD1-204ENST00000581226 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 CAMTA1Q9Y6Y1 1673 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 BRWD3Q6RI45 1802 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 TUBGCP6Q96RT7 1819 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 A0A0U1RQV1 116 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 FAM47DPA6NHR8 397 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 CCDC169A6NNP5 214 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 DNALI1O14645 258 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 ERLIN1O75477 346 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 CLPXO76031 633 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 IL4P05112 153 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 C1GALT1C1LP0DN25 315 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 OPRK1P41145 380 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 NSG1P42857 185 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 PITPNAQ00169 270 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 ZNF816Q0VGE8 651 aaPredicted RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 CDC20Q12834 499 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 CDH17Q12864 832 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 SRSF5Q13243 272 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 DNLZQ5SXM8 178 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 PRR9Q5T870 116 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 PRAMEF20Q5VT98 475 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 SAXO2Q658L1 398 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 TMEM205Q6UW68 189 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 METTL13Q8N6R0 699 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 PIFOQ8TCI5 191 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 FLYWCH2Q96CP2 140 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 SEH1LQ96EE3 360 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 DUS3LQ96G46 650 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 TIMM17AQ99595 171 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 RACGAP1Q9H0H5 632 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 WFDC1Q9HC57 220 aa2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 TRMT112Q9UI30 125 aaKnown RBP2.38□□□□□ -2.03
SMCHD1-204ENST00000581226 HMCN1Q96RW7 5635 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 YEATS2Q9ULM3 1422 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 ZNF850A8MQ14 1090 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 CCNE2O96020 404 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 HLA-DQA1P01909 254 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 SSTR5P35346 364 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 TMED10P49755 219 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 ATP5IP56385 69 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 VSX2P58304 361 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 UBE2NP61088 152 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 ADARB1P78563 741 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 PPP1R7Q15435 360 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 SSX2Q16385 188 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 LRRC66Q68CR7 880 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 TMEM107Q6UX40 140 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 GTPBP8Q8N3Z3 284 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 ZFP41Q8N8Y5 198 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 FBXL13Q8NEE6 735 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 OR4K5Q8NGD3 323 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 OR5B3Q8NH48 314 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 ELMO1Q92556 727 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 MRGPRFQ96AM1 343 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 NUP58Q9BVL2 599 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 PKIBQ9C010 78 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 DENND4AQ7Z401 1863 aa2.37□□□□□ -2.03
SMCHD1-204ENST00000581226 LRRIQ3A6PVS8 624 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 RAB29O14966 203 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 SERPINA5P05154 406 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 FOXN2P32314 431 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 NAA10P41227 235 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 RND2P52198 227 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 GBE1Q04446 702 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 CUL2Q13617 745 aa2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 PIGHQ14442 188 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-204ENST00000581226 CHRNA6Q15825 494 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms