RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 FGF2P09038 288 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 PRSS3P35030 304 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 GABRA4P48169 554 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 GABREP78334 506 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 RPL18Q07020 188 aaKnown RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 DPY19L4Q7Z388 723 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 NUP54Q7Z3B4 507 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 HSD17B13Q7Z5P4 300 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 PDZD9Q8IXQ8 264 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 PRSS35Q8N3Z0 413 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 OR4D10Q8NGI6 311 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 OR51S1Q8NGJ8 323 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 OR10AC1Q8NH08 325 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 OIT3Q8WWZ8 545 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM138Q9NPI0 162 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 SLC17A5Q9NRA2 495 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 UBQLN4Q9NRR5 601 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 MUC6Q6W4X9 2439 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 TRAV18A0A075B6X5 111 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 CDC40O60508 579 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 SRPX2O60687 465 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 AKR7A3O95154 331 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 PNLIPP16233 465 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 POU3F4P49335 361 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 EFNB2P52799 333 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 CCL7P80098 99 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 EGR4Q05215 589 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 GRM7Q14831 915 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 MESTQ5EB52 335 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 FDX2Q6P4F2 183 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF574Q6ZN55 896 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 EIF4E3Q8N5X7 224 aaKnown RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 OR51A4Q8NGJ6 313 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 ST8SIA4Q92187 359 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 TSPAN32Q96QS1 320 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 INTS14Q96SY0 518 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 NCOR1P1Q9H4R4 102 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 APMAPQ9HDC9 416 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 PDE7BQ9NP56 450 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 MELTFP08582 738 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 RPA2P15927 270 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 CCR4P51679 360 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 BTG2P78543 158 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ACY1Q03154 408 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 SKP2Q13309 424 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 FNDC7Q5VTL7 733 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 C11orf88Q6PI97 169 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 WDR74Q6RFH5 385 aaPredicted RBP11.91□□□□□ -0.5
VPS4A-204ENST00000566354 MED25Q71SY5 747 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF615Q8N8J6 731 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 GATSQ8NAP1 163 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 BVESQ8NE79 360 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 OR5M9Q8NGP3 310 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 OR6K3Q8NGY3 331 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 PHOSPHO1Q8TCT1 267 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ADAMTS18Q8TE60 1221 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 FAM3DQ96BQ1 224 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 C4orf45Q96LM5 186 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM68Q96MH6 324 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 C12orf57Q99622 126 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ULBP3Q9BZM4 244 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 EXO5Q9H790 373 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 EXOSC3Q9NQT5 275 aaKnown RBP11.91□□□□□ -0.5
VPS4A-204ENST00000566354 UPB1Q9UBR1 384 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 PRODH2Q9UF12 536 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 CLDN16Q9Y5I7 305 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 LOC100289279A0A1B0GTE1 492 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 H7C1C5 153 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 SLC17A2O00624 439 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ITGA5P08648 1049 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ACTBP60709 375 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 LCN6P62502 163 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ACTG1P63261 375 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 GUCA2AQ02747 115 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 TOMM20Q15388 145 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 CD226Q15762 336 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 RAB11BQ15907 218 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ODF4Q2M2E3 257 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 PRTGQ2VWP7 1150 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 C2orf76Q3KRA6 126 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 DCAF12L2Q5VW00 463 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF660Q6AZW8 331 aaPredicted RBP11.91□□□□□ -0.5
VPS4A-204ENST00000566354 STEAP1BQ6NZ63 245 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 CLEC1AQ8NC01 280 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 IFI44Q8TCB0 444 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 CCDC107Q8WV48 283 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 TSEN15Q8WW01 171 aaKnown RBP11.91□□□□□ -0.5
VPS4A-204ENST00000566354 MFFQ9GZY8 342 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 PCDHB16Q9NRJ7 776 aa11.91□□□□□ -0.5
VPS4A-204ENST00000566354 SLC22A23A1A5C7 686 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 ARGFXA6NJG6 315 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 TTLL8A6PVC2 850 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 CD3DP04234 171 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 KIR3DL2P43630 455 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 UBE2MP61081 183 aaKnown RBP11.9□□□□□ -0.5
VPS4A-204ENST00000566354 ERV3-1Q14264 604 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 YOD1Q5VVQ6 348 aaPredicted RBP11.9□□□□□ -0.5
VPS4A-204ENST00000566354 CBLN3Q6UW01 205 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 TFAP2EQ6VUC0 442 aa11.9□□□□□ -0.5
VPS4A-204ENST00000566354 SUMF1Q8NBK3 374 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms