RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HIST1H3AP68431 136 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 CCNIQ14094 377 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 MOGQ16653 247 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 SPATS1Q496A3 300 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 CCDC92Q53HC0 331 aaPredicted RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 SPRNQ5BIV9 151 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 HIST2H3PS2Q5TEC6 136 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 OTPQ5XKR4 325 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 TMEM154Q6P9G4 183 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 HIST2H3AQ71DI3 136 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 ADCK1Q86TW2 530 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 NUAK2Q9H093 628 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 TBCCD1Q9NVR7 557 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 EIF3KQ9UBQ5 218 aaKnown RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 COA3Q9Y2R0 106 aaPredicted RBP12.64□□□□□ -0.39
CLN3-213ENST00000565047 V9GYQ6 96 aa12.64□□□□□ -0.39
CLN3-213ENST00000565047 IGLV1-36A0A0B4J1U3 117 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 OR6C6A6NF89 314 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 XKRYO14609 159 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 ARPC3O15145 178 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 CDC14BO60729 498 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 DEAF1O75398 565 aaPredicted RBP12.63□□□□□ -0.39
CLN3-213ENST00000565047 UBOX5O94941 541 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 GAAP10253 952 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 ITGA2P17301 1181 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 SRD5A1P18405 259 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 FPR3P25089 353 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 GUCA1AP43080 201 aaPredicted RBP12.63□□□□□ -0.39
CLN3-213ENST00000565047 GSSP48637 474 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 GLO1Q04760 184 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 DBPQ10586 325 aaPredicted RBP12.63□□□□□ -0.39
CLN3-213ENST00000565047 PSG7Q13046 419 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 AQP6Q13520 282 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 KRT72Q14CN4 511 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 RSPO1Q2MKA7 263 aaPredicted RBP12.63□□□□□ -0.39
CLN3-213ENST00000565047 RFX4Q33E94 735 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 FAM209AQ5JX71 171 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 C1orf94Q6P1W5 598 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 SMARCD3Q6STE5 483 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 GLB1L2Q8IW92 636 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 FITM2Q8N6M3 262 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 ICA1LQ8NDH6 482 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 ABHD4Q8TB40 342 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 TSSK2Q96PF2 358 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 DDOQ99489 341 aa12.63□□□□□ -0.39
CLN3-213ENST00000565047 NDRG4Q9ULP0 352 aaKnown RBP12.63□□□□□ -0.39
CLN3-213ENST00000565047 STAB1Q9NY15 2570 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 IGHV1-69-2A0A0G2JMI3 117 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 B4DSR2 109 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 SOCS2O14508 198 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 PPIHO43447 177 aaKnown RBP12.62□□□□□ -0.39
CLN3-213ENST00000565047 SGCEO43556 437 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 KHDRBS3O75525 346 aaKnown RBP12.62□□□□□ -0.39
CLN3-213ENST00000565047 GADD45GO95257 159 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 GPANK1O95872 356 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 TFP02787 698 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 CD55P08174 381 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 SMIM11AP58511 58 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 SCRN3Q0VDG4 424 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 CDK5R2Q13319 367 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 KRTAP27-1Q3LI81 207 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 UNQ6126/PRO20091Q6UXV3 157 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 Q6ZR03 302 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 USP51Q70EK9 711 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 DEFB107AQ8IZN7 70 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 OR6V1Q8N148 313 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 SNX33Q8WV41 574 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 SLC7A6Q92536 515 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 NSMCE2Q96MF7 247 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 OR52D1Q9H346 318 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 ELOVL3Q9HB03 270 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 TREM2Q9NZC2 230 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 ASH2LQ9UBL3 628 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 TMEFF2Q9UIK5 374 aaPredicted RBP12.62□□□□□ -0.39
CLN3-213ENST00000565047 B9D1Q9UPM9 204 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 AURKCQ9UQB9 309 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 STARD10Q9Y365 291 aa12.62□□□□□ -0.39
CLN3-213ENST00000565047 TCRBV5S2A0A599 114 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 RNF212BA8MTL3 300 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 RER1O15258 196 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 SPRY3O43610 288 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 DOK2O60496 412 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 GMNNO75496 209 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 DCTN3O75935 186 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 PPP1R3DO95685 299 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 FABP3P05413 133 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 KITLGP21583 273 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 TUBG1P23258 451 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 GCH1P30793 250 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 LIPAP38571 399 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 MAGEA2P43356 314 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 RPS6KA3P51812 740 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 SPIBQ01892 262 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 HNRNPA0Q13151 305 aaKnown RBP12.61□□□□□ -0.39
CLN3-213ENST00000565047 TSTQ16762 297 aaKnown RBP12.61□□□□□ -0.39
CLN3-213ENST00000565047 KRTAP24-1Q3LI83 254 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 ZNF362Q5T0B9 420 aaPredicted RBP12.61□□□□□ -0.39
CLN3-213ENST00000565047 ZNF770Q6IQ21 691 aaPredicted RBP12.61□□□□□ -0.39
CLN3-213ENST00000565047 PGBD2Q6P3X8 592 aa12.61□□□□□ -0.39
CLN3-213ENST00000565047 ZBTB46Q86UZ6 589 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms