RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 NOTOA8MTQ0 251 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 ACOT7O00154 380 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 SLC43A1O75387 559 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 H2BFMP0C1H6 154 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 OCM2P0CE71 109 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 THBS2P35442 1172 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 GUCA1AP43080 201 aaPredicted RBP11.22□□□□□ -0.61
USP3-213ENST00000559711 MAGEB1P43366 347 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 MMP16P51512 607 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 OR10A3P58181 314 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 MFGE8Q08431 387 aaPredicted RBP11.22□□□□□ -0.61
USP3-213ENST00000559711 RNFT1Q5M7Z0 435 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 RDH10Q8IZV5 341 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 OR2AJ1Q8NGZ0 328 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 THRSPQ92748 146 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 NABP1Q96AH0 204 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 TMEM45BQ96B21 275 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 G6PC2Q9NQR9 355 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 CENPMQ9NSP4 180 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 FBXL3Q9UKT7 428 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 SLC22A13Q9Y226 551 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 CSAG2Q9Y5P2 127 aa11.22□□□□□ -0.61
USP3-213ENST00000559711 NCKAP5O14513 1909 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 UPK1BO75841 260 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 ITGB2P05107 769 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 EPXP11678 715 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 MSR1P21757 451 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 APEX1P27695 318 aaKnown RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 RSPO4Q2I0M5 234 aaPredicted RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 ZNF181Q2M3W8 571 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 IDNKQ5T6J7 187 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 CFAP77Q6ZQR2 320 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 AAED1Q7RTV5 226 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 OR10AC1Q8NH08 325 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 PPP1R14AQ96A00 147 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 ZNF775Q96BV0 537 aaPredicted RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 SDHCQ99643 169 aaPredicted RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 SMAD5Q99717 465 aaKnown RBP11.21□□□□□ -0.61
USP3-213ENST00000559711 SOSTQ9BQB4 213 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 ULBP2Q9BZM5 246 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 NELFAQ9H3P2 528 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 NIPAL2Q9H841 368 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 POLR1DQ9Y2S0 133 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 EMC9Q9Y3B6 208 aa11.21□□□□□ -0.61
USP3-213ENST00000559711 FREM3P0C091 2139 aa11.21□□□□□ -0.62
USP3-213ENST00000559711 TRAV17A0A0B4J275 112 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 TMEM269A0A1B0GVZ9 245 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ZNF878C9JN71 531 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 PDCD5O14737 125 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 TMEM127O75204 238 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ISG15P05161 165 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 EVX1P49640 407 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ZNF84P51523 738 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 MRPS34P82930 218 aaKnown RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 SRYQ05066 204 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SGCAQ16586 387 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 RGS21Q2M5E4 152 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SLC25A35Q3KQZ1 300 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 RIPPLY2Q5TAB7 128 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SYT9Q86SS6 491 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SNX29P2Q8IUI4 249 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 OR51A4Q8NGJ6 313 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ABHD3Q8WU67 409 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 CHPT1Q8WUD6 406 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 DIRAS2Q96HU8 199 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SH3GL3Q99963 347 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 CCDC32Q9BV29 185 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ZNF416Q9BWM5 594 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 RBM24Q9BX46 236 aaKnown RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 RNF122Q9H9V4 155 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 PNRC2Q9NPJ4 139 aaKnown RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 B3GAT2Q9NPZ5 323 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 FAM206AQ9NX38 181 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ASH2LQ9UBL3 628 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 DAPK2Q9UIK4 370 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 OR52A1Q9UKL2 312 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 KLK13Q9UKR3 277 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 TRGV5A0A0B4J1U4 118 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 DCDC2BA2VCK2 349 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ISPDA4D126 451 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 FABP12A6NFH5 140 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 HPGDSO60760 199 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SLC19A2O60779 497 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SYNGR4O95473 234 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 CPN1P15169 458 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 CTSSP25774 331 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 SOX2P48431 317 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 HIST1H3AP68431 136 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ENDOGQ14249 297 aaKnown RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 ZNF79Q15937 498 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 HIST2H3PS2Q5TEC6 136 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 FAM27BQ5VT28 67 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 XKRXQ6PP77 449 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 METAP1DQ6UB28 335 aaPredicted RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 STAC2Q6ZMT1 411 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 ZNF704Q6ZNC4 412 aaPredicted RBP11.2□□□□□ -0.62
USP3-213ENST00000559711 Q6ZNX1 250 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 HIST2H3AQ71DI3 136 aa11.2□□□□□ -0.62
USP3-213ENST00000559711 CPT1CQ8TCG5 803 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms