RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPEF1Q9Y4P9 236 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 SPENQ96T58 3664 aaKnown RBP8.06□□□□□ -1.12
LDLR-210ENST00000559340 ROS1P08922 2347 aa8.06□□□□□ -1.12
LDLR-210ENST00000559340 CCDC182A6NF36 153 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ZNF670-ZNF695F2Z2N8 137 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 M0R129 80 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 M0R1B8 84 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 DENRO43583 198 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 MPZL1O95297 269 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 FADS2O95864 444 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 IGKV3-15P01624 115 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CRYAAP02489 173 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 APOC1P02654 83 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CD3EP07766 207 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 MMP7P09237 267 aaPredicted RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 SBK2P0C263 348 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 OR2T7P0C7T2 308 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ZNF32P17041 273 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 IGFBP2P18065 325 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 GABRB1P18505 474 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 GRNP28799 593 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 CCKARP32238 428 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 SLC15A1P46059 708 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 GDI2P50395 445 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 ZNF83P51522 516 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CXCR4P61073 352 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ACTC1P68032 377 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ACTA1P68133 377 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 RAB40BQ12829 278 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CDK5R2Q13319 367 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 EIF2B1Q14232 305 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 ENDOGQ14249 297 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 RAB35Q15286 201 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 PCK2Q16822 640 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 TBC1D28Q2M2D7 210 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 PABPC1L2AQ5JQF8 200 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ALKBH2Q6NS38 261 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 KCTD18Q6PI47 426 aaPredicted RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 UGT2A3Q6UWM9 527 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 MDP1Q86V88 176 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 EGFL6Q8IUX8 553 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 TIGD4Q8IY51 512 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 C1orf174Q8IYL3 243 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 OR2T27Q8NH04 317 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 THEM6Q8WUY1 208 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 FBXO17Q96EF6 278 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 RNFT2Q96EX2 444 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 DCLRE1CQ96SD1 692 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 HDHD2Q9H0R4 259 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 SP140LQ9H930 580 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CDH20Q9HBT6 801 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 MRPL22Q9NWU5 206 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 CHCHD3Q9NX63 227 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 PLEK2Q9NYT0 353 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CRIM1Q9NZV1 1036 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 ASH2LQ9UBL3 628 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 EIF3KQ9UBQ5 218 aaKnown RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 CYB5R1Q9UHQ9 305 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 LAMP5Q9UJQ1 280 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 GDF2Q9UK05 429 aaPredicted RBP8.05□□□□□ -1.12
LDLR-210ENST00000559340 TPRKBQ9Y3C4 175 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 COMMD3-BMI1R4GMX3 469 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 RELNP78509 3460 aa8.05□□□□□ -1.12
LDLR-210ENST00000559340 CACNA1DQ01668 2161 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 DSCAMO60469 2012 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 A0A1W2PR80 420 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 A1L4Q6 167 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 OR6C6A6NF89 314 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 EFCAB10A6NFE3 127 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 C19orf84I3L1E1 186 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 DOK2O60496 412 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 CLDN1O95832 211 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 CLIC3O95833 236 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 GPANK1O95872 356 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 IGLV1-44P01699 117 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 SCG5P05408 212 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 THBDP07204 575 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 LYNP07948 512 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 RNF224P0DH78 156 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 IDH3GP51553 393 aaPredicted RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 GRB2P62993 217 aaKnown RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 TUBA1BP68363 451 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 TUBA4AP68366 448 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 HIST1H3AP68431 136 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 PSG4Q00888 419 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 GALK2Q01415 458 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 RAB39AQ14964 217 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 MEP1BQ16820 701 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 ELFN2Q5R3F8 820 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 HIST2H3PS2Q5TEC6 136 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 HIST2H2BCQ6DN03 193 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 DEGS2Q6QHC5 323 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 SEZ6L2Q6UXD5 910 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 HIST2H3AQ71DI3 136 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 TUBA1AQ71U36 451 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 DPY19L4Q7Z388 723 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 DCXRQ7Z4W1 244 aa8.04□□□□□ -1.12
LDLR-210ENST00000559340 BCDIN3DQ7Z5W3 292 aaKnown RBP8.04□□□□□ -1.12
LDLR-210ENST00000559340 SLC35F2Q8IXU6 374 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms