RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ARID1AO14497 2285 aa6.73□□□□□ -1.33
LIMA1-213ENST00000552720 NCOA6Q14686 2063 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 IGKV3D-11A0A0A0MRZ8 115 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 HMSDA8MTL9 139 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 H3BMH7 237 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF354AO60765 605 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 RAB3DO95716 219 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ITGB2P05107 769 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR4E1P0C645 316 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 GP1BBP13224 206 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ACHEP22303 614 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 CCR5P51681 352 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 NSDHLQ15738 373 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SGCBQ16585 318 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 LRRC37A5PQ49AS3 106 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SCGB2B2Q4G0G5 96 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 FAM74A1Q5RGS3 127 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 C1orf140Q5VVS0 124 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 LIN54Q6MZP7 749 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 FDX2Q6P4F2 183 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 CATSPERDQ86XM0 798 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 JAGN1Q8N5M9 183 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ACBD4Q8NC06 268 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ZBTB44Q8NCP5 570 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR4D6Q8NGJ1 314 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR1S1Q8NH92 325 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SCARB1Q8WTV0 552 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 THAP3Q8WTV1 239 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SLC39A7Q92504 469 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ZDHHC16Q969W1 377 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 PMEPA1Q969W9 287 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SLC41A2Q96JW4 573 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 MNTQ99583 582 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 TTYH1Q9H313 450 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 PRMT8Q9NR22 394 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 TAS2R8Q9NYW2 309 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 GPR160Q9UJ42 338 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 KLK13Q9UKR3 277 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ATXN7L1Q9ULK2 861 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ADAMTS20P59510 1910 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 TMEM82A0PJX8 343 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 TLCD2A6NGC4 264 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 C2CD4DB7Z1M9 353 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SHISA8B8ZZ34 492 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SOX1O00570 391 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 PLPP3O14495 311 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 CDK2AP1O14519 115 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 PHYHO14832 338 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 NPIPB7O75200 414 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 B3GALNT1O75752 331 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ZNF735P0CB33 412 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 IGFBP3P17936 291 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ATF4P18848 351 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ZP3P21754 424 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 GALNSP34059 522 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 NUP62P37198 522 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 EIF1AXP47813 144 aaKnown RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SLC6A8P48029 635 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 RIDAP52758 137 aaKnown RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SCAND1P57086 179 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR1D5P58170 312 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SMAD2Q15796 467 aaKnown RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 BEX5Q5H9J7 111 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 RNF144BQ7Z419 303 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 DCXRQ7Z4W1 244 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 CD163Q86VB7 1156 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 GVQW1Q8N7I0 195 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR13C3Q8NGS6 347 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 OR1L3Q8NH93 324 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 FAM46BQ96A09 425 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 SEC22AQ96IW7 307 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 ARL5BQ96KC2 179 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 PELOQ9BRX2 385 aaKnown RBP6.72□□□□□ -1.33
LIMA1-213ENST00000552720 WWTR1Q9GZV5 400 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 MFFQ9GZY8 342 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 WDR13Q9H1Z4 485 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 TXNIPQ9H3M7 391 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 MSRAQ9UJ68 235 aa6.72□□□□□ -1.33
LIMA1-213ENST00000552720 LOC107986453A0A1B0GWG9 222 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ALG1L2C9J202 215 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 P2RY10O00398 339 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ADAM10O14672 748 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 KCNAB3O43448 404 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 SRSF10O75494 262 aaKnown RBP6.71□□□□□ -1.33
LIMA1-213ENST00000552720 DXOO77932 396 aaKnown RBP6.71□□□□□ -1.33
LIMA1-213ENST00000552720 PGCP20142 388 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 C4BPBP20851 252 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 CFPP27918 469 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 MPGP29372 298 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ROM1Q03395 351 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 CFHR1Q03591 330 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 PMPCAQ10713 525 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 GK2Q14410 553 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ELOCQ15369 112 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 ATPAF1Q5TC12 328 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-213ENST00000552720 HLA-DQA1Q5Y7H0 255 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 OR52W1Q6IF63 320 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 STEAP2Q8NFT2 490 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 OR13C8Q8NGS7 320 aa6.71□□□□□ -1.33
LIMA1-213ENST00000552720 OR52N5Q8NH56 324 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms