RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 A0A1B0GUS0 222 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 POLR3GO15318 223 aaPredicted RBP14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 TGDSO95455 350 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 THRBP10828 461 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 TNFSF4P23510 183 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 IDH3AP50213 366 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 ERFP50548 548 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 MMP16P51512 607 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 MTPNP58546 118 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 KRTAP10-3P60369 221 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 LRRN1Q6UXK5 716 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 BRD3OSQ6XYD6 125 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 MUC20Q8N307 709 aaPredicted RBP14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 SGTBQ96EQ0 304 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 PARD6BQ9BYG5 372 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 GCM1Q9NP62 436 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 MAN2C1Q9NTJ4 1040 aa14.9□□□□□ -0.02
CLSTN3-214ENST00000542663 SRRM5B3KS81 715 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 ABHD16AO95870 558 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 IGF2P01344 180 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 SCG5P05408 212 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 GSTM3P21266 225 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 RBM34P42696 430 aaKnown RBP14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 RAG2P55895 527 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 AGKQ53H12 422 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 BTNL3Q6UXE8 466 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 C17orf107Q6ZR85 190 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 PATL1Q86TB9 770 aaKnown RBP14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 NPEPL1Q8NDH3 523 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 OR10S1Q8NGN2 331 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 RAB40AQ8WXH6 277 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 CMBLQ96DG6 245 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 PKP2Q99959 881 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 ALG12Q9BV10 488 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 MMP27Q9H306 513 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 BEX1Q9HBH7 125 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 TMEM165Q9HC07 324 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 TBCCD1Q9NVR7 557 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 C1RLQ9NZP8 487 aa14.89□□□□□ -0.03
CLSTN3-214ENST00000542663 GMNCA6NCL1 334 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 ZNF205O95201 554 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 NR2C1P13056 603 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 RPS2P15880 293 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 PCBD1P61457 104 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 TOP3AQ13472 1001 aaPredicted RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 ZNF362Q5T0B9 420 aaPredicted RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 OLFML2AQ68BL7 652 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 BRICD5Q6PL45 260 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 FIP1L1Q6UN15 594 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 CROCCP2Q86T23 111 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 KLBQ86Z14 1044 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 OR4F5Q8NH21 305 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 ZNF420Q8TAQ5 688 aaPredicted RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 TMEM239Q8WW34 195 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 THOC1Q96FV9 657 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 CCT8L2Q96SF2 557 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 KAT8Q9H7Z6 458 aaKnown RBP14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 MARCH7Q9H992 704 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 TNFRSF19Q9NS68 423 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 STARD10Q9Y365 291 aa14.88□□□□□ -0.03
CLSTN3-214ENST00000542663 KIR2DS1A0A191URI9 304 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 A0A1W2PPL8 197 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 NDUFA7O95182 113 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 CYB5R3P00387 301 aaPredicted RBP14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 TNFRSF1BP20333 461 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 RPL27P61353 136 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 GNB2P62879 340 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 ALG10Q5BKT4 473 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 ARL9Q6T311 187 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 DHDDSQ86SQ9 333 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 SYT9Q86SS6 491 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 HAVCR1Q96D42 359 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 RBP7Q96R05 134 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 CGREF1Q99674 301 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 TMEM246Q9BRR3 403 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 CCDC28BQ9BUN5 200 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 CHIAQ9BZP6 476 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 NKIRAS1Q9NYS0 192 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 NDRG4Q9ULP0 352 aaKnown RBP14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 HIF3AQ9Y2N7 669 aa14.87□□□□□ -0.03
CLSTN3-214ENST00000542663 M0QZ24 198 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 SURF4O15260 269 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 PIP5K1CO60331 668 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 SHOX2O60902 331 aaPredicted RBP14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 COX5BP10606 129 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 MSR1P21757 451 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 TUBG1P23258 451 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 CPT2P23786 658 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 MAGOHP61326 146 aaKnown RBP14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 ASPHD2Q6ICH7 369 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 Q6YL49 198 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 SLC30A8Q8IWU4 369 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 DPP10Q8N608 796 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 FITM2Q8N6M3 262 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 SLC26A7Q8TE54 656 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 C10orf82Q8WW14 230 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 ZDHHC16Q969W1 377 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 C7orf26Q96N11 449 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 EMC7Q9NPA0 242 aa14.86□□□□□ -0.03
CLSTN3-214ENST00000542663 POLE4Q9NR33 117 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms