RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DCXRQ7Z4W1 244 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 OR2AJ1Q8NGZ0 328 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 ST7LQ8TDW4 575 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 GHSRQ92847 366 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 PGLYRP3Q96LB9 341 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 LINC00470Q9BZP3 86 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 GLRX2Q9NS18 164 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 SLCO1C1Q9NYB5 712 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 POLR1DQ9Y2S0 133 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 RP1L1Q8IWN7 2480 aaPredicted RBP18.71■□□□□ 0.59
VPS28-212ENST00000530836 SHANK1Q9Y566 2161 aa18.71■□□□□ 0.59
VPS28-212ENST00000530836 ARPC4-TTLL3A0A0A6YYG9 625 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 GABRPO00591 440 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 PSKH1P11801 424 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 MSR1P21757 451 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 RIDAP52758 137 aaKnown RBP18.71■□□□□ 0.58
VPS28-212ENST00000530836 SLC3A1Q07837 685 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 RPTNQ6XPR3 784 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 ELOVL3Q9HB03 270 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 CCDC59Q9P031 241 aaKnown RBP18.71■□□□□ 0.58
VPS28-212ENST00000530836 GRIP1Q9Y3R0 1128 aa18.71■□□□□ 0.58
VPS28-212ENST00000530836 SLC22A20A6NK97 555 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 PSMD9O00233 223 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 IL1AP01583 271 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 PLA2G2AP14555 144 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 DCTDP32321 178 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 SOX6P35712 828 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 MRPS34P82930 218 aaKnown RBP18.7■□□□□ 0.58
VPS28-212ENST00000530836 ALKBH1Q13686 389 aaKnown RBP18.7■□□□□ 0.58
VPS28-212ENST00000530836 PHYHD1Q5SRE7 291 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 C22orf42Q6IC83 251 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 RNF133Q8WVZ7 376 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 ZNF775Q96BV0 537 aaPredicted RBP18.7■□□□□ 0.58
VPS28-212ENST00000530836 DACH2Q96NX9 599 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 MED18Q9BUE0 208 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 RBM24Q9BX46 236 aaKnown RBP18.7■□□□□ 0.58
VPS28-212ENST00000530836 HDHD5Q9BXW7 423 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 A3GALT2U3KPV4 340 aa18.7■□□□□ 0.58
VPS28-212ENST00000530836 A0A1B0GTH9 108 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 CLPXO76031 633 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 CCR9P51686 369 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 SF3B4Q15427 424 aaKnown RBP eCLIP18.69■□□□□ 0.586e-8■■■■■ 27
VPS28-212ENST00000530836 LRRN1Q6UXK5 716 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 ADGRE4PQ86SQ3 457 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 ABHD4Q8TB40 342 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 PHYHIPQ92561 330 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 TRMT61AQ96FX7 289 aaKnown RBP18.69■□□□□ 0.58
VPS28-212ENST00000530836 AMELYQ99218 206 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 NIPAL2Q9H841 368 aa18.69■□□□□ 0.58
VPS28-212ENST00000530836 GATBO75879 557 aaKnown RBP18.68■□□□□ 0.58
VPS28-212ENST00000530836 RPP14O95059 124 aaKnown RBP18.68■□□□□ 0.58
VPS28-212ENST00000530836 CDAP32320 146 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 NTF4P34130 210 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 TGFBR1P36897 503 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 PSMB10P40306 273 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 MRPL49Q13405 166 aaKnown RBP18.68■□□□□ 0.58
VPS28-212ENST00000530836 C3AR1Q16581 482 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 SGCAQ16586 387 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 NRN1LQ496H8 165 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 YIF1BQ5BJH7 314 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 FGD2Q7Z6J4 655 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.68■□□□□ 0.58
VPS28-212ENST00000530836 LINC00346Q8IVM7 164 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 TUSC5Q8IXB3 177 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 SLCO5A1Q9H2Y9 848 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 RNF167Q9H6Y7 350 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 CRLF2Q9HC73 371 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 GALNT8Q9NY28 637 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 ZNF281Q9Y2X9 895 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 ZNF407Q9C0G0 2248 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 SVILO95425 2214 aa18.68■□□□□ 0.58
VPS28-212ENST00000530836 TMEM212A6NML5 194 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 SC5DO75845 299 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 RBPJQ06330 500 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 FAM27BQ5VT28 67 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 OR2G2Q8NGZ5 317 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 SLAMF6Q96DU3 332 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 COMMD4Q9H0A8 199 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 GDF2Q9UK05 429 aaPredicted RBP18.67■□□□□ 0.58
VPS28-212ENST00000530836 LRP12Q9Y561 859 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 LHFPL6Q9Y693 200 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 DNAJC13O75165 2243 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 AHRRA9YTQ3 701 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 KRT33AO76009 404 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 H2BFMP0C1H6 154 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 GNLYP22749 145 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 OPRL1P41146 370 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 OTPQ5XKR4 325 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 TMEM91Q6ZNR0 172 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 OR5AK2Q8NH90 309 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 THRSPQ92748 146 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 RNF166Q96A37 237 aaPredicted RBP18.67■□□□□ 0.58
VPS28-212ENST00000530836 NABP1Q96AH0 204 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 GMPPAQ96IJ6 420 aaPredicted RBP18.67■□□□□ 0.58
VPS28-212ENST00000530836 WACQ9BTA9 647 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 SLIRPQ9GZT3 109 aaKnown RBP18.67■□□□□ 0.58
VPS28-212ENST00000530836 EMC7Q9NPA0 242 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 FRRS1LQ9P0K9 344 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 ZNF835Q9Y2P0 537 aa18.67■□□□□ 0.58
VPS28-212ENST00000530836 ZNF878C9JN71 531 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms