RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 FOXF2Q12947 444 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 GGTLC2Q14390 218 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 P2RY6Q15077 328 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 ETFDHQ16134 617 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 SMN1Q16637 294 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 PCK2Q16822 640 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 KLHL12Q53G59 568 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 PHYHD1Q5SRE7 291 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 TSPO2Q5TGU0 170 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 LCN1P1Q5VSP4 162 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 FAM27BQ5VT28 67 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 RNLSQ5VYX0 342 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CARD17Q5XLA6 110 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 Q6ZT83 130 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 FOXL2NBQ6ZUU3 175 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 RHOUQ7L0Q8 258 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 BCDIN3DQ7Z5W3 292 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 GLB1L2Q8IW92 636 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 ZNF786Q8N393 782 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 ZNF610Q8N9Z0 462 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 NOXO1Q8NFA2 376 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 PROKR2Q8NFJ6 384 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 OR2T27Q8NH04 317 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CNIH3Q8TBE1 160 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 GGHQ92820 318 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 MYDGFQ969H8 173 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 MNTQ99583 582 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 SFXN3Q9BWM7 321 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 RBM24Q9BX46 236 aaKnown RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 HDHD5Q9BXW7 423 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 MED20Q9H944 212 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 SIAEQ9HAT2 523 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CRLF2Q9HC73 371 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 GPR35Q9HC97 309 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 FGF20Q9NP95 211 aaPredicted RBP6.5□□□□□ -1.37
CD44-228ENST00000528455 FKBP14Q9NWM8 211 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 AASSQ9UDR5 926 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 MALT1Q9UDY8 824 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 KCNG2Q9UJ96 466 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 TINAGQ9UJW2 476 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 BLOC1S6Q9UL45 172 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 PCDHGB5Q9Y5G0 923 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 CELSR2Q9HCU4 2923 aa6.5□□□□□ -1.37
CD44-228ENST00000528455 NCOA6Q14686 2063 aaPredicted RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 A0A0G2JNJ9 132 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 CCDC182A6NF36 153 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNF99A8MXY4 864 aaPredicted RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 C22orf46C9J442 243 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNF587BE7ETH6 402 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 M0R129 80 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SLC1A7O00341 560 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNF593O00488 134 aaPredicted RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 TNFAIP8O95379 198 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 GYPBP06028 91 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SBK2P0C263 348 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 RNF224P0DH78 156 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 OR8G3PP0DMU2 310 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 DBTP11182 482 aaKnown RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 CTLA4P16410 223 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNF823P16415 610 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 PAX7P23759 505 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 MPGP29372 298 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ATP6V1E1P36543 226 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SH3BGRP55822 239 aaPredicted RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 SLC35A2P78381 396 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ROR2Q01974 943 aaKnown RBP6.49□□□□□ -1.37
CD44-228ENST00000528455 TGFBR3Q03167 851 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ST3GAL4Q11206 333 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 FAPQ12884 760 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 MLANAQ16655 118 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 OR7E24Q6IFN5 339 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 TFAP2EQ6VUC0 442 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 C3P1Q6ZMU1 363 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SHFQ7M4L6 423 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SLC16A9Q7RTY1 509 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 KCTD20Q7Z5Y7 419 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 TIGD4Q8IY51 512 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 CCDC36Q8IYA8 594 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 GCNT2Q8N0V5 402 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 UBE2J2Q8N2K1 259 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 CNEP1R1Q8N9A8 125 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNF540Q8NDQ6 660 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 BBS1Q8NFJ9 593 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SLC26A10Q8NG04 563 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 OR9Q1Q8NGQ5 310 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 LILRB4Q8NHJ6 448 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ZNRF4Q8WWF5 429 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 RNFT2Q96EX2 444 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 TMEM80Q96HE8 168 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 DIRC2Q96SL1 478 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 JAM3Q9BX67 310 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 CDCA4Q9BXL8 241 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ULBP2Q9BZM5 246 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 YIPF3Q9GZM5 350 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 NELFAQ9H3P2 528 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 SEC61A2Q9H9S3 476 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 AMBNQ9NP70 447 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 CCNB1IP1Q9NPC3 277 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 INPP5EQ9NRR6 644 aa6.49□□□□□ -1.37
CD44-228ENST00000528455 ELOVL5Q9NYP7 299 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms