RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ELFN2Q5R3F8 820 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 ZNF362Q5T0B9 420 aaPredicted RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 VASH1Q7L8A9 365 aaPredicted RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 SYT9Q86SS6 491 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 SYNPRQ8TBG9 265 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 SLC25A40Q8TBP6 338 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 CANT1Q8WVQ1 401 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 NEU4Q8WWR8 484 aaPredicted RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 LRGUKQ96M69 825 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 DDOQ99489 341 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 CHID1Q9BWS9 393 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 BPESC1Q9GZL8 116 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 LRMDAQ9H2I8 198 aa15.51■□□□□ 0.07
COL9A3-214ENST00000490398 RPRD1BQ9NQG5 326 aaKnown RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 SAMHD1Q9Y3Z3 626 aaKnown RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 SONP18583 2426 aaKnown RBP15.51■□□□□ 0.07
COL9A3-214ENST00000490398 LOC390937A0A1W2PQ73 354 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 BHLHE40O14503 412 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 TFP02787 698 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 CSF3P09919 207 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 RAP2AP10114 183 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 COL8A2P25067 703 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 MAGEB1P43366 347 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 CENPAP49450 140 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 GGTLC2Q14390 218 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 KCNMB1Q16558 191 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 MICAQ29983 383 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 NPEPL1Q8NDH3 523 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 OR52E2Q8NGJ4 325 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 OR4Q3Q8NH05 313 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 IPCEF1Q8WWN9 437 aaPredicted RBP15.5■□□□□ 0.07
COL9A3-214ENST00000490398 MARS2Q96GW9 593 aaKnown RBP15.5■□□□□ 0.07
COL9A3-214ENST00000490398 PIMREGQ9BSJ6 248 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 CADM1Q9BY67 442 aaKnown RBP15.5■□□□□ 0.07
COL9A3-214ENST00000490398 BCL2L14Q9BZR8 327 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 OR2J1Q9GZK6 312 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 REEP1Q9H902 201 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 LHFPL6Q9Y693 200 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 ABCA1O95477 2261 aa15.5■□□□□ 0.07
COL9A3-214ENST00000490398 DHRS12A0PJE2 317 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 RER1O15258 196 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 SGCEO43556 437 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 CD5LO43866 347 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 DOK2O60496 412 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 SOX14O95416 240 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 DBHP09172 617 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 IGHV4-31P0DP07 118 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 USF1P22415 310 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-214ENST00000490398 HTR5AP47898 357 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 KLF3P57682 345 aaPredicted RBP15.49■□□□□ 0.07
COL9A3-214ENST00000490398 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.49■□□□□ 0.07
COL9A3-214ENST00000490398 SCRN3Q0VDG4 424 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 HNRNPA0Q13151 305 aaKnown RBP15.49■□□□□ 0.07
COL9A3-214ENST00000490398 NKPD1Q17RQ9 610 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 CORO6Q6QEF8 472 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 RASSF6Q6ZTQ3 369 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 JAZF1Q86VZ6 243 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 ALDH16A1Q8IZ83 802 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 ZNF786Q8N393 782 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 CYB561A3Q8NBI2 242 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 ABHD4Q8TB40 342 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 UBASH3BQ8TF42 649 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 YIPF5Q969M3 257 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 C4orf45Q96LM5 186 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 NIPSNAP1Q9BPW8 284 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 SOX7Q9BT81 388 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 ARMC1Q9NVT9 282 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 IL20Q9NYY1 176 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 POMPQ9Y244 141 aa15.49■□□□□ 0.07
COL9A3-214ENST00000490398 OR6C6A6NF89 314 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 AQP12BA6NM10 295 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 NDUFS8O00217 210 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 GSC2O15499 205 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 ICMTO60725 284 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 DNAJC8O75937 253 aaPredicted RBP15.48■□□□□ 0.07
COL9A3-214ENST00000490398 PSKH1P11801 424 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 LSM6P62312 80 aaKnown RBP15.48■□□□□ 0.07
COL9A3-214ENST00000490398 HIST1H3AP68431 136 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 BNIP1Q12981 228 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 AQP6Q13520 282 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 TRIP10Q15642 601 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 DNAL1Q4LDG9 190 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 HIST2H3PS2Q5TEC6 136 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 LYPD4Q6UWN0 246 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 HIST2H3AQ71DI3 136 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 ZBTB46Q86UZ6 589 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 AQP12AQ8IXF9 295 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 HS3ST5Q8IZT8 346 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 SLC26A10Q8NG04 563 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 OR10G2Q8NGC3 310 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 KLF14Q8TD94 323 aaPredicted RBP15.48■□□□□ 0.07
COL9A3-214ENST00000490398 SLCO4A1Q96BD0 722 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 SNX18Q96RF0 628 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 TSSK6Q9BXA6 273 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 MS4A5Q9H3V2 200 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 YAE1D1Q9NRH1 226 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 PLEK2Q9NYT0 353 aa15.48■□□□□ 0.07
COL9A3-214ENST00000490398 FBXO9Q9UK97 447 aaPredicted RBP15.48■□□□□ 0.07
COL9A3-214ENST00000490398 ABCA2Q9BZC7 2435 aa15.47■□□□□ 0.07
COL9A3-214ENST00000490398 LRP5LA4QPB2 252 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms