RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ABHD16AO95870 558 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 TFP02787 698 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 MSX2P35548 267 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 SRP14P37108 136 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 ARHGDIAP52565 204 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 DVL1P1P54792 670 aaPredicted RBP13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 GNGT1P63211 74 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 SPIBQ01892 262 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 TEKQ02763 1124 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 MVKQ03426 396 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 SCRN3Q0VDG4 424 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 MBNL2Q5VZF2 373 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 GPR139Q6DWJ6 353 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 SYT9Q86SS6 491 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 GLCCI1Q86VQ1 547 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 PYURFQ96I23 114 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 RACGAP1Q9H0H5 632 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 GORASP2Q9H8Y8 452 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 ELOVL3Q9HB03 270 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 NRIP3Q9NQ35 241 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 MAGEL2Q9UJ55 1249 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 NDRG4Q9ULP0 352 aaKnown RBP13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 IER3IP1Q9Y5U9 82 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 CACNG2Q9Y698 323 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 ANK2Q01484 3957 aa13.38□□□□□ -0.27
CCDC88B-205ENST00000472524 ZSCAN5BA6NJL1 495 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 SGCEO43556 437 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 KHDRBS3O75525 346 aaKnown RBP13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 IGHV1-46P01743 117 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 GAAP10253 952 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 ITGA2P17301 1181 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 CRYBB2P43320 205 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 MMP15P51511 669 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 FXYD6P3P58550 94 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 LIPNQ5VXI9 398 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 ARL9Q6T311 187 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 PTCHD4Q6ZW05 846 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 PGAM4Q8N0Y7 254 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 FANK1Q8TC84 345 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 DHRS1Q96LJ7 313 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 NSMCE2Q96MF7 247 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 GPX7Q96SL4 187 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 GPA33Q99795 319 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 POFUT1Q9H488 388 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 ARL8BQ9NVJ2 186 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 TAGLN3Q9UI15 199 aa13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 COA3Q9Y2R0 106 aaPredicted RBP13.37□□□□□ -0.27
CCDC88B-205ENST00000472524 CLDN25C9JDP6 229 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 H3BSA7 217 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ARPC2O15144 300 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 TIMM8AO60220 97 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 GADD45GO95257 159 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 MPZL1O95297 269 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 PPP1R3DO95685 299 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 SEMG1P04279 462 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 MSMBP08118 114 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 COX5BP10606 129 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 HSD17B1P14061 328 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 CENPAP49450 140 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 RPS6KA3P51812 740 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 MXRA7P84157 204 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 AQP6Q13520 282 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 HFEQ30201 348 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 FAM209AQ5JX71 171 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 SAMD4BQ5PRF9 694 aaKnown RBP13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 SMARCD3Q6STE5 483 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 DPY19L2P2Q6ZN68 376 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 VASH1Q7L8A9 365 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ADCK1Q86TW2 530 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 GLB1L2Q8IW92 636 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 C1orf174Q8IYL3 243 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 MCUR1Q96AQ8 359 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ELMOD3Q96FG2 381 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 CDRT15Q96T59 188 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 FUZQ9BT04 418 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 WACQ9BTA9 647 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 HIF1ANQ9NWT6 349 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 PLEK2Q9NYT0 353 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 VSX1Q9NZR4 365 aaPredicted RBP13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ASH2LQ9UBL3 628 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 POLR1DQ9Y2S0 133 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ARL2BPQ9Y2Y0 163 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 GRIP1Q9Y3R0 1128 aa13.36□□□□□ -0.27
CCDC88B-205ENST00000472524 ICMTO60725 284 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 GPANK1O95872 356 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 PCMT1P22061 227 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 CDKN2AP42771 156 aaKnown RBP13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 SMIM11AP58511 58 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 LMO4P61968 165 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 C1orf94Q6P1W5 598 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 ZNF771Q7L3S4 317 aaPredicted RBP13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 DEFB107AQ8IZN7 70 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 NPEPL1Q8NDH3 523 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 OR51F2Q8NH61 342 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 SLC7A6Q92536 515 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 CCL17Q92583 94 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 TMEM186Q96B77 213 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 TSSK2Q96PF2 358 aa13.35□□□□□ -0.27
CCDC88B-205ENST00000472524 ERMAPQ96PL5 475 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms