RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 ASH2LQ9UBL3 628 aa8.29□□□□□ -1.08
VPS52-216ENST00000471309 GDF2Q9UK05 429 aaPredicted RBP8.29□□□□□ -1.08
VPS52-216ENST00000471309 NOSIPQ9Y314 301 aaKnown RBP8.29□□□□□ -1.08
VPS52-216ENST00000471309 R4GMQ9 66 aa8.29□□□□□ -1.08
VPS52-216ENST00000471309 TRAV1-2A0A0B4J238 106 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 TRBV5-5A0A0J9YX44 114 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 SHISA3A0PJX4 238 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 SLC22A20A6NK97 555 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 VGLL3A8MV65 326 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 ZNF879B4DU55 563 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 HAX1O00165 279 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MRPL33O75394 65 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 UCHL1P09936 223 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 H2BFMP0C1H6 154 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 NPR2P20594 1047 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CFL1P23528 166 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 MAPK3P27361 379 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 KIR3DL2P43630 455 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MMP16P51512 607 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 UCNP55089 124 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 TMPRSS3P57727 454 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MXD1Q05195 221 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MFGE8Q08431 387 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 HNRNPA0Q13151 305 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 ENDOGQ14249 297 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 ZNF829Q3KNS6 432 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 NRN1LQ496H8 165 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 FAM27BQ5VT28 67 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CORO6Q6QEF8 472 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 UNQ9370/PRO34162Q6UXP9 181 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CFAP77Q6ZQR2 320 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 SPATC1Q76KD6 591 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 ADGRE4PQ86SQ3 457 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 TPRA1Q86W33 373 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CATSPERDQ86XM0 798 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MCEMP1Q8IX19 187 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 IL17RDQ8NFM7 739 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 OR10S1Q8NGN2 331 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 S100ZQ8WXG8 99 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 SARAFQ96BY9 339 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 ALKBH3Q96Q83 286 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 OR14A2Q96R54 314 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 TAAR6Q96RI8 345 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 ZNF416Q9BWM5 594 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 RBM24Q9BX46 236 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 WDR12Q9GZL7 423 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 C6orf62Q9GZU0 229 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 PPIL3Q9H2H8 161 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 SLCO5A1Q9H2Y9 848 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 NIPAL2Q9H841 368 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MOB1AQ9H8S9 216 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 SMURF1Q9HCE7 757 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 HMG20AQ9NP66 347 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 DDX28Q9NUL7 540 aaKnown RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 TMEM38BQ9NVV0 291 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CLCF1Q9UBD9 225 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 CRNNQ9UBG3 495 aaPredicted RBP8.28□□□□□ -1.08
VPS52-216ENST00000471309 CAMK2AQ9UQM7 478 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 B3GNT3Q9Y2A9 372 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 PEX16Q9Y5Y5 336 aa8.28□□□□□ -1.08
VPS52-216ENST00000471309 MED12Q93074 2177 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 OR14I1A6ND48 311 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 CLDN25C9JDP6 229 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 LOC110117498-PIK3R3F6TDL0 507 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 RPL36A-HNRNPH2H7BZ11 118 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 PNPP00491 289 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 YES1P07947 543 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 CLEC2LP0C7M8 214 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 S100A5P33763 92 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 BMXP51813 675 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 PSMA6P60900 246 aaKnown RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 HIST1H3AP68431 136 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 DCTN2Q13561 401 aaKnown RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 ZNF846Q147U1 533 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 SGCAQ16586 387 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 Q499Y3 187 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 HSD17B12Q53GQ0 312 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 HIST2H3PS2Q5TEC6 136 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 KLHL24Q6TFL4 600 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 HIST2H3AQ71DI3 136 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 LINGO2Q7L985 606 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 CROCCP3Q8IVE0 287 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 TUSC5Q8IXB3 177 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 MFSD4AQ8N468 514 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 ZNF676Q8N7Q3 588 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 RBMXL3Q8N7X1 1067 aaKnown RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 GPR148Q8TDV2 347 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 ZNF775Q96BV0 537 aaPredicted RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 DERL3Q96Q80 235 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 TPK1Q9H3S4 243 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 CRLF2Q9HC73 371 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 GPR35Q9HC97 309 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 PNRC2Q9NPJ4 139 aaKnown RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 GLRX2Q9NS18 164 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 CENPMQ9NSP4 180 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 FAM206AQ9NX38 181 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 PLEKHB1Q9UF11 243 aaPredicted RBP8.27□□□□□ -1.09
VPS52-216ENST00000471309 FBXL3Q9UKT7 428 aa8.27□□□□□ -1.09
VPS52-216ENST00000471309 LHX6Q9UPM6 363 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms