RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 CRMP1Q14194 572 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 MAD2L1BPQ15013 274 aaPredicted RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ZNF239Q16600 458 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 SMN1Q16637 294 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ANKDD1AQ495B1 522 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 KRTCAP3Q53RY4 240 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 C6orf141Q5SZD1 244 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 C9orf135Q5VTT2 229 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 OTPQ5XKR4 325 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 C12orf73Q69YU5 71 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ARHGAP11AQ6P4F7 1023 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 PAQR6Q6TCH4 344 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CLEC9AQ6UXN8 241 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CREB3L2Q70SY1 520 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 AAED1Q7RTV5 226 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 PXKQ7Z7A4 578 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CCDC71Q8IV32 467 aaPredicted RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 WDFY1Q8IWB7 410 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CHERPQ8IWX8 916 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 TUSC5Q8IXB3 177 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ZNF100Q8IYN0 542 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 PM20D2Q8IYS1 436 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 UBE2J2Q8N2K1 259 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 MARVELD2Q8N4S9 558 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CLDN22Q8N7P3 220 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ARIH2OSQ8N7S6 290 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 SCAIQ8N9R8 606 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 BBS1Q8NFJ9 593 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 OR9K2Q8NGE7 335 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 OR9Q1Q8NGQ5 310 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 OR6N1Q8NGY5 312 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 RHOXF1Q8NHV9 184 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 FNDC9Q8TBE3 224 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 TMEM163Q8TC26 289 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ZPLD1Q8TCW7 415 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ABHD3Q8WU67 409 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 SMAP2Q8WU79 429 aaPredicted RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 LIPHQ8WWY8 451 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 NSMAFQ92636 917 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 HDAC2Q92769 488 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 MUL1Q969V5 352 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CPNE4Q96A23 557 aaPredicted RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 INTS12Q96CB8 462 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 LRR1Q96L50 414 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 Q96MT0 163 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 TSSK2Q96PF2 358 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ZNF385AQ96PM9 386 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 RBP7Q96R05 134 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 PITX2Q99697 317 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ANKRD60Q9BZ19 345 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 PRRG3Q9BZD7 231 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 CCDC90BQ9GZT6 254 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 TXNIPQ9H3M7 391 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 NRIP3Q9NQ35 241 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 HINT3Q9NQE9 182 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 RPRD1BQ9NQG5 326 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 SCN3BQ9NY72 215 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 KLHL21Q9UJP4 597 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 BAIAP2Q9UQB8 552 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 B3GALT5Q9Y2C3 310 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 NOSIPQ9Y314 301 aaKnown RBP3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 MED12Q93074 2177 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 ACACAQ13085 2346 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 NCOR2Q9Y618 2525 aa3.6□□□□□ -1.83
TMEM39A-204ENST00000468545 TRGV8A0A0C4DH27 118 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 A0A1W2PNV4 684 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 OR6C68A6NDL8 312 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 TVP23AA6NH52 213 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 A6NIZ1 184 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SNTNA6NMZ2 147 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 AP4M1O00189 453 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 ARPC3O15145 178 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SPRY2O43597 315 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 IDH3BO43837 385 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 MPZL2O60487 215 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SLC16A7O60669 478 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 CYTIPO60759 359 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 MRPL33O75394 65 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 WBP4O75554 376 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 VAMP5O95183 116 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 IGHG1P01857 330 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 YES1P07947 543 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 MRPL3P09001 348 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 QDPRP09417 244 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 GABRB1P18505 474 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 PAICSP22234 425 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 CSNK1A1P48729 337 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 HCCSP53701 268 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 CDH11P55287 796 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 CDH15P55291 814 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 RAP1BP61224 184 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SNRPGP62308 76 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 RPS4XP62701 263 aaKnown RBP3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 RAP1AP62834 184 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 H3F3AP84243 136 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 RBPJQ06330 500 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 FMODQ06828 376 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SLC17A1Q14916 467 aa3.59□□□□□ -1.83
TMEM39A-204ENST00000468545 SF3B4Q15427 424 aaKnown RBP eCLIP3.59□□□□□ -1.832e-9■■■□□ 15.6
TMEM39A-204ENST00000468545 ETFDHQ16134 617 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms