RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 OR13C9Q8NGT0 318 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 OR6S1Q8NH40 331 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 MAFIPQ8WZ33 124 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 SPACA5Q96QH8 159 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 INTS14Q96SY0 518 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 GFI1Q99684 422 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 PELI2Q9HAT8 420 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 STEAP1Q9UHE8 339 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 PI4KAP42356 2102 aa11.73□□□□□ -0.53
PTPRN-202ENST00000409251 SDK2Q58EX2 2172 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 TRAV14DV4A0A0A6YYC5 116 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 SERTM1A2A2V5 107 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 DUXAA6NLW8 204 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 HMSDA8MTL9 139 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 PRH1P02810 166 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 HOXB5P09067 269 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 RUNX2Q13950 521 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 FZD2Q14332 565 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 PPP1R3BQ86XI6 285 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 DND1Q8IYX4 353 aaKnown RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 NUDCD2Q8WVJ2 157 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 PHF7Q9BWX1 381 aaPredicted RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 PITHD1Q9GZP4 211 aaPredicted RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 C8orf33Q9H7E9 229 aaPredicted RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 ASPMQ8IZT6 3477 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 A0A0D9SG52 128 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 TNFSF12O43508 249 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 YIF1AO95070 293 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 JMJD7P0C870 316 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 FOSL2P15408 326 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 HPGDP15428 266 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 RPS10P46783 165 aaKnown RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 RNASE10Q5GAN6 216 aaKnown RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 GLYATL3Q5SZD4 288 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 C11orf87Q6NUJ2 197 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 OOSP2Q86WS3 158 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 ZNF584Q8IVC4 421 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 FOXRED1Q96CU9 486 aaPredicted RBP11.72□□□□□ -0.53
PTPRN-202ENST00000409251 ALG12Q9BV10 488 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 LAT2Q9GZY6 243 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 UPB1Q9UBR1 384 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 ATG2AQ2TAZ0 1938 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 A0A1W2PPH5 198 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 CSF1P09603 554 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 CASRP41180 1078 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 BDH1Q02338 343 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 ZNF528Q3MIS6 628 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 DCST2Q5T1A1 773 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 KCNRGQ8N5I3 272 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 OR4N2Q8NGD1 307 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 SDF2Q99470 211 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 SUCNR1Q9BXA5 334 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 FN3KRPQ9HA64 309 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 MMP24Q9Y5R2 645 aa11.72□□□□□ -0.53
PTPRN-202ENST00000409251 CLEC3AO75596 197 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 SPARCP09486 303 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 SFTA3P0C7M3 94 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 HSD17B2P37059 387 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 RPS11P62280 158 aaKnown RBP eCLIP11.71□□□□□ -0.53
PTPRN-202ENST00000409251 ACSM1Q08AH1 577 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 DMWDQ09019 674 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 C2orf76Q3KRA6 126 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 LRRC25Q8N386 305 aaPredicted RBP11.71□□□□□ -0.53
PTPRN-202ENST00000409251 OR2I1PQ8NGU4 316 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 SECTM1Q8WVN6 248 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 MRPL48Q96GC5 212 aaKnown RBP11.71□□□□□ -0.53
PTPRN-202ENST00000409251 MEGF10Q96KG7 1140 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 UNKLQ9H9P5 680 aaKnown RBP11.71□□□□□ -0.53
PTPRN-202ENST00000409251 BCL2L10Q9HD36 194 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 PCOLCE2Q9UKZ9 415 aa11.71□□□□□ -0.53
PTPRN-202ENST00000409251 NUP210Q8TEM1 1887 aaPredicted RBP11.71□□□□□ -0.53
PTPRN-202ENST00000409251 TRAV1-2A0A0B4J238 106 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 PRAMEF26H0Y7S4 382 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 BCL2L11O43521 198 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 ADAP1O75689 374 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 PDGFBP01127 241 aaPredicted RBP11.71□□□□□ -0.54
PTPRN-202ENST00000409251 OR2T7P0C7T2 308 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 BCKDHBP21953 392 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 BIKQ13323 160 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 PPP1R1AQ13522 171 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 ARHGAP11AQ6P4F7 1023 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 OVCH1Q7RTY7 1134 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 CSNK1A1LQ8N752 337 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 NAXEQ8NCW5 288 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 OR2T27Q8NH04 317 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 MIB2Q96AX9 1013 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 WDR34Q96EX3 536 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 RGCCQ9H4X1 137 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 RHOFQ9HBH0 211 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 UQCC1Q9NVA1 299 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 TMED7Q9Y3B3 224 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 A0A1B0GV90 55 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 GLSO94925 669 aaPredicted RBP11.71□□□□□ -0.54
PTPRN-202ENST00000409251 RAB40ALP0C0E4 278 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 NDUFA6P56556 154 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 RAB2AP61019 212 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 Q499Y3 187 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 KIAA0895LQ68EN5 471 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 JMJD6Q6NYC1 403 aaPredicted RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms