RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 LCN6P62502 163 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ARF1P84077 181 aaKnown RBP8.01□□□□□ -1.13
VPS53-203ENST00000401468 CD47Q08722 323 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 GGTLC2Q14390 218 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ETFDHQ16134 617 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SNCBQ16143 134 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SNAPC1Q16533 368 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 TIMM23BQ5SRD1 257 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 FAM27BQ5VT28 67 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 NXNL2Q5VZ03 156 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ANKRD16Q6P6B7 361 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 DPPA2Q7Z7J5 298 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 GLB1L2Q8IW92 636 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 CCDC36Q8IYA8 594 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ENTHD1Q8IYW4 607 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SLC22A24Q8N4F4 322 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 DHRSXQ8N5I4 330 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 FAM169BQ8N8A8 192 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 TCEANCQ8N8B7 351 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 CYB561A3Q8NBI2 242 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 STEAP2Q8NFT2 490 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SLC26A10Q8NG04 563 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 OR2T4Q8NH00 348 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ZNRF4Q8WWF5 429 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 KISS1RQ969F8 398 aaPredicted RBP8.01□□□□□ -1.13
VPS53-203ENST00000401468 ZNF75AQ96N20 296 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 DACH2Q96NX9 599 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 TSSK2Q96PF2 358 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ANKRD60Q9BZ19 345 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 CXXC4Q9H2H0 198 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SIAEQ9HAT2 523 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 OBP2BQ9NPH6 170 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 RPRD1BQ9NQG5 326 aaKnown RBP8.01□□□□□ -1.13
VPS53-203ENST00000401468 POLE4Q9NR33 117 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 B3GNT2Q9NY97 397 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 HAO2Q9NYQ3 351 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 ZNF226Q9NYT6 803 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 TVP23BQ9NYZ1 205 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 NDRG3Q9UGV2 375 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 MOKQ9UQ07 419 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 GMPPBQ9Y5P6 360 aa8.01□□□□□ -1.13
VPS53-203ENST00000401468 SONP18583 2426 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 CCDC182A6NF36 153 aa8□□□□□ -1.13
VPS53-203ENST00000401468 TRIM64A6NGJ6 449 aa8□□□□□ -1.13
VPS53-203ENST00000401468 TRIM64BA6NI03 449 aa8□□□□□ -1.13
VPS53-203ENST00000401468 PRR23D1E9PI22 279 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 C16orf97H3BN30 126 aa8□□□□□ -1.13
VPS53-203ENST00000401468 MPZL2O60487 215 aa8□□□□□ -1.13
VPS53-203ENST00000401468 SLC16A7O60669 478 aa8□□□□□ -1.13
VPS53-203ENST00000401468 LYZL6O75951 148 aa8□□□□□ -1.13
VPS53-203ENST00000401468 KRT33AO76009 404 aa8□□□□□ -1.13
VPS53-203ENST00000401468 GLCEO94923 617 aa8□□□□□ -1.13
VPS53-203ENST00000401468 IGLV1-40P01703 118 aa8□□□□□ -1.13
VPS53-203ENST00000401468 TFP02787 698 aa8□□□□□ -1.13
VPS53-203ENST00000401468 RPLP1P05386 114 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 SCG5P05408 212 aa8□□□□□ -1.13
VPS53-203ENST00000401468 GNAO1P09471 354 aa8□□□□□ -1.13
VPS53-203ENST00000401468 PRR23D2P0DMB1 279 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 CLUP10909 449 aa8□□□□□ -1.13
VPS53-203ENST00000401468 PAICSP22234 425 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 LOXP28300 417 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 LAP3P28838 519 aa8□□□□□ -1.13
VPS53-203ENST00000401468 ZNF84P51523 738 aa8□□□□□ -1.13
VPS53-203ENST00000401468 BLVRAP53004 296 aa8□□□□□ -1.13
VPS53-203ENST00000401468 NKX6-1P78426 367 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 HSF2Q03933 536 aa8□□□□□ -1.13
VPS53-203ENST00000401468 GLO1Q04760 184 aa8□□□□□ -1.13
VPS53-203ENST00000401468 TMED1Q13445 227 aa8□□□□□ -1.13
VPS53-203ENST00000401468 ENDOGQ14249 297 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 C3orf36Q3SXR2 165 aa8□□□□□ -1.13
VPS53-203ENST00000401468 TEX30Q5JUR7 227 aa8□□□□□ -1.13
VPS53-203ENST00000401468 Q5PR19 223 aa8□□□□□ -1.13
VPS53-203ENST00000401468 MEDAGQ5VYS4 303 aa8□□□□□ -1.13
VPS53-203ENST00000401468 PLBD1Q6P4A8 553 aa8□□□□□ -1.13
VPS53-203ENST00000401468 IZUMO2Q6UXV1 221 aa8□□□□□ -1.13
VPS53-203ENST00000401468 CXXC5Q7LFL8 322 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 BHLHA15Q7RTS1 189 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 CPOQ8IVL8 374 aa8□□□□□ -1.13
VPS53-203ENST00000401468 UBE2J2Q8N2K1 259 aa8□□□□□ -1.13
VPS53-203ENST00000401468 WDR31Q8NA23 367 aa8□□□□□ -1.13
VPS53-203ENST00000401468 MAPK1IP1LQ8NDC0 245 aa8□□□□□ -1.13
VPS53-203ENST00000401468 ZNF555Q8NEP9 628 aa8□□□□□ -1.13
VPS53-203ENST00000401468 FAM81AQ8TBF8 368 aa8□□□□□ -1.13
VPS53-203ENST00000401468 APH1BQ8WW43 257 aa8□□□□□ -1.13
VPS53-203ENST00000401468 NINJ1Q92982 152 aa8□□□□□ -1.13
VPS53-203ENST00000401468 UBE2FQ969M7 185 aa8□□□□□ -1.13
VPS53-203ENST00000401468 Q96MF0 132 aa8□□□□□ -1.13
VPS53-203ENST00000401468 SLC17A5Q9NRA2 495 aa8□□□□□ -1.13
VPS53-203ENST00000401468 MRPL22Q9NWU5 206 aaKnown RBP8□□□□□ -1.13
VPS53-203ENST00000401468 CRNNQ9UBG3 495 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 KCNG2Q9UJ96 466 aa8□□□□□ -1.13
VPS53-203ENST00000401468 RAB26Q9ULW5 256 aa8□□□□□ -1.13
VPS53-203ENST00000401468 COA3Q9Y2R0 106 aaPredicted RBP8□□□□□ -1.13
VPS53-203ENST00000401468 SLC25A15Q9Y619 301 aa8□□□□□ -1.13
VPS53-203ENST00000401468 ABCA1O95477 2261 aa8□□□□□ -1.13
VPS53-203ENST00000401468 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.99□□□□□ -1.13
VPS53-203ENST00000401468 A0A1W2PR80 420 aa7.99□□□□□ -1.13
VPS53-203ENST00000401468 ZNF503-AS2A6NEH8 195 aa7.99□□□□□ -1.13
VPS53-203ENST00000401468 FAM183AA6NL82 134 aa7.99□□□□□ -1.13
VPS53-203ENST00000401468 H7C1Q1 480 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms