RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 BATF2Q8N1L9 274 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 IL22RA1Q8N6P7 574 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 ARSGQ96EG1 525 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 HHIPQ96QV1 700 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 SSUH2Q9Y2M2 353 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 COL1A1P02452 1464 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TERTO14746 1132 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 PLSCR1O15162 318 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF750Q32MQ0 723 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TIGITQ495A1 244 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 C11orf87Q6NUJ2 197 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 PPP1R3BQ86XI6 285 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 SLC38A6Q8IZM9 456 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF485Q8NCK3 441 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 ZFPM2Q8WW38 1151 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 SLIRPQ9GZT3 109 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 RAB18Q9NP72 206 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 MCTS1Q9ULC4 181 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 EFSO43281 561 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF280AP59817 542 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 HIST1H3AP68431 136 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 GABREP78334 506 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 LINC00303Q3SY05 128 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR2G2Q8NGZ5 317 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR10J5Q8NHC4 309 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 APOOQ9BUR5 198 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 HINT3Q9NQE9 182 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 SLC2A8Q9NY64 477 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 PPT2Q9UMR5 302 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 DCCP43146 1447 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 DOC2BQ14184 412 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 HLXQ14774 488 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM104Q8NE00 496 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 FAM71CQ8NEG0 241 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR4C16Q8NGL9 310 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR5V1Q9UGF6 321 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 NTNG1Q9Y2I2 539 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TRAV36DV7A0A075B6V5 113 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 CCDC187A0A096LP49 1063 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TRBV11-1A0A0K0K1C0 115 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 LEUTXA8MZ59 168 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 PYCARD-AS1I3L0S3 204 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 SIGLEC6O43699 453 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 PRDX1Q06830 199 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM176BQ3YBM2 270 aaPredicted RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF626Q68DY1 528 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 NUDT9Q9BW91 350 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 RNF150Q9ULK6 438 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 CACNA1CQ13936 2221 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 LOC102723971A0A1B0GUV8 181 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 HMX2A2RU54 273 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 IFITM5A6NNB3 132 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 CLEC3BP05452 202 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 P2RY2P41231 377 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 RPS15P62841 145 aaKnown RBP10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR2W3Q7Z3T1 314 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 OR2A14Q96R47 310 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 LOXHD1Q8IVV2 1947 aa10.86□□□□□ -0.67
SYNPO-202ENST00000394243 XRN1Q8IZH2 1706 aaKnown RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 HSBP1O75506 76 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF25P17030 456 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 PPP1CBP62140 327 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 PCK2Q16822 640 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 VWA1Q6PCB0 445 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 SLCO4C1Q6ZQN7 724 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 RIMKLAQ8IXN7 391 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 DYRK2Q92630 601 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 WSB2Q9NYS7 404 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 RABIFP47224 123 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 NCMAPQ5T1S8 102 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 OTUD1Q5VV17 481 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF813Q6ZN06 617 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 UBTD2Q8WUN7 234 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ASB13Q8WXK3 278 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 LINC00052Q96N35 136 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 SIRT3Q9NTG7 399 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 MIOXQ9UGB7 285 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 LMO7Q8WWI1 1683 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 SCGB1C2P0DMR2 95 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 MMP15P51511 669 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 PRSS36Q5K4E3 855 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ISG20L2Q9H9L3 353 aaKnown RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 PDLIM7Q9NR12 457 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 AP4M1O00189 453 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 CTSLP07711 333 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 C1SP09871 688 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 IAPPP10997 89 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 ACOT6Q3I5F7 207 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 BCL7CQ8WUZ0 217 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 MS4A10Q96PG2 267 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 CCNL2Q96S94 520 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 MED1Q15648 1581 aaPredicted RBP10.85□□□□□ -0.67
SYNPO-202ENST00000394243 BMPR1BO00238 502 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 BMPR1AP36894 532 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM81Q6P7N7 255 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 WDR88Q6ZMY6 472 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 NUDCD2Q8WVJ2 157 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 BET1LQ9NYM9 111 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 PPP1R3CQ9UQK1 317 aa10.85□□□□□ -0.67
SYNPO-202ENST00000394243 GSTP1P09211 210 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms