RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 SPANXN2Q5MJ10 180 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SFXN4Q6P4A7 337 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 FOXL2NBQ6ZUU3 175 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 FCRLAQ7L513 359 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 FAM109AQ8N4B1 249 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF676Q8N7Q3 588 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 NABP1Q96AH0 204 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 SLAMF6Q96DU3 332 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 GFI1Q99684 422 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 ACKR4Q9NPB9 350 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 COMMD3Q9UBI1 195 aa12.19□□□□□ -0.46
PTPRF-202ENST00000372405 GDF2Q9UK05 429 aaPredicted RBP12.19□□□□□ -0.46
PTPRF-202ENST00000372405 CEACAM4O75871 244 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SOX2P48431 317 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF79Q15937 498 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 C3AR1Q16581 482 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 HSD17B12Q53GQ0 312 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 IDNKQ5T6J7 187 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 DDI2Q5TDH0 399 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 DEGS2Q6QHC5 323 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SLC22A16Q86VW1 577 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 MGAQ8IWI9 3026 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 TMEM178AQ8NBL3 297 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 PHYHIPQ92561 330 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ABTB1Q969K4 478 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-202ENST00000372405 CEP19Q96LK0 163 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SLC25A18Q9H1K4 315 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 PNRC2Q9NPJ4 139 aaKnown RBP12.18□□□□□ -0.46
PTPRF-202ENST00000372405 TIGARQ9NQ88 270 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 G6PC2Q9NQR9 355 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 CENPMQ9NSP4 180 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ASH2LQ9UBL3 628 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 RCE1Q9Y256 329 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 EMC9Q9Y3B6 208 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 R4GMQ9 66 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 FREM1Q5H8C1 2179 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ANKRD61A6NGH8 418 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 DHHO43323 396 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 HPGDSO60760 199 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 TMCC2O75069 709 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SLC2A2P11168 524 aaPredicted RBP12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SRMP19623 302 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 RAB3BP20337 219 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 SLC10A1Q14973 349 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 LINGO2Q7L985 606 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ZNF416Q9BWM5 594 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 COMMD4Q9H0A8 199 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 DEFB127Q9H1M4 99 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 C1orf198Q9H425 327 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ZCCHC4Q9H5U6 513 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 ZDHHC11Q9H8X9 412 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 GTF2A1LQ9UNN4 478 aa12.18□□□□□ -0.46
PTPRF-202ENST00000372405 AK6Q9Y3D8 172 aaKnown RBP12.18□□□□□ -0.46
PTPRF-202ENST00000372405 TRBV5-7A0A0A0MS05 114 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 GPR171O14626 319 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 RER1O15258 196 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 DOK2O60496 412 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 UPK1BO75841 260 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 H2BFMP0C1H6 154 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 OCM2P0CE71 109 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 NR2C1P13056 603 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 ATF1P18846 271 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 CFL1P23528 166 aaKnown RBP12.17□□□□□ -0.46
PTPRF-202ENST00000372405 ENDOGQ14249 297 aaKnown RBP12.17□□□□□ -0.46
PTPRF-202ENST00000372405 PDSS1Q5T2R2 415 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 INTS12Q96CB8 462 aaKnown RBP12.17□□□□□ -0.46
PTPRF-202ENST00000372405 ULBP2Q9BZM5 246 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 SPRR3Q9UBC9 169 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 DAPK2Q9UIK4 370 aa12.17□□□□□ -0.46
PTPRF-202ENST00000372405 RTTNQ86VV8 2226 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 IGKV3D-15A0A087WSY6 115 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 TBX1O43435 398 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 GFRA3O60609 400 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 WISP2O76076 250 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ADRA2CP18825 462 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ANOS1P23352 680 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 BCL2A1Q16548 175 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 SGCAQ16586 387 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ASPHD2Q6ICH7 369 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 AAED1Q7RTV5 226 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.16□□□□□ -0.46
PTPRF-202ENST00000372405 GPR148Q8TDV2 347 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 RBM24Q9BX46 236 aaKnown RBP12.16□□□□□ -0.46
PTPRF-202ENST00000372405 NELFAQ9H3P2 528 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 FAM206AQ9NX38 181 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 POLR1DQ9Y2S0 133 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 DMXL2Q8TDJ6 3036 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 APC2O95996 2303 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 TRAV8-7A0A075B6U6 113 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 A0A0B4J203 849 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 TMEM269A0A1B0GVZ9 245 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 ACOT7O00154 380 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 KLK10O43240 276 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 PAHP00439 452 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 EPXP11678 715 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 MSR1P21757 451 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 MMP16P51512 607 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 LSM6P62312 80 aaKnown RBP12.16□□□□□ -0.46
PTPRF-202ENST00000372405 PPP3R1P63098 170 aa12.16□□□□□ -0.46
PTPRF-202ENST00000372405 FOXC1Q12948 553 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms