RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 FKBP1BP68106 108 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 FAM3AP98173 230 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 ARHGAP19Q14CB8 494 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 KHDC3LQ587J8 217 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 LMNTD1Q8N9Z9 388 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 MCHR2Q969V1 340 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 TMEM106AQ96A25 262 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 SLC35B3Q9H1N7 401 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 DPEP2Q9H4A9 486 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 RXFP3Q9NSD7 469 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 FRRS1LQ9P0K9 344 aa16.74■□□□□ 0.27
SMPD1-201ENST00000342245 MDC1Q14676 2089 aaKnown RBP16.74■□□□□ 0.27
SMPD1-201ENST00000342245 TGOLN2O43493 480 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 DUSP11O75319 330 aaKnown RBP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 UPK3AO75631 287 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 SPARCP09486 303 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 CTGFP29279 349 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 MC3RP41968 323 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF84P51523 738 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 HNRNPKP61978 463 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 TMEM268Q5VZI3 342 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ALKBH2Q6NS38 261 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF627Q7L945 461 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 CARFQ8N187 725 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 OR51L1Q8NGJ5 315 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 MR1Q95460 341 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 GAL3ST3Q96A11 431 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF775Q96BV0 537 aaPredicted RBP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 Q96M85 177 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 C20orf24Q9BUV8 137 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 SUCNR1Q9BXA5 334 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 FAM212BQ9NTI7 297 aaPredicted RBP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 PRAMEF26H0Y7S4 382 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 NUDT21O43809 227 aaKnown RBP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 STK17BO94768 372 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 EOMESO95936 686 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ERCC1P07992 297 aaPredicted RBP16.73■□□□□ 0.27
SMPD1-201ENST00000342245 RASGEF1BQ0VAM2 473 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 UBE2V2Q15819 145 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 ISXQ2M1V0 245 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 OR9K2Q8NGE7 335 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 MUCL1Q96DR8 90 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 SLC41A2Q96JW4 573 aa16.73■□□□□ 0.27
SMPD1-201ENST00000342245 MSGN1A6NI15 193 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 LIPCP11150 499 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF28P17035 718 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 TBPP20226 339 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 CHATP28329 748 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 SMAD3P84022 425 aaKnown RBP16.72■□□□□ 0.27
SMPD1-201ENST00000342245 LMAN2Q12907 356 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 CEBPEQ15744 281 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF674Q2M3X9 581 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 FAM166AQ6J272 317 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 GDPD4Q6W3E5 623 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 SLC16A9Q7RTY1 509 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 GKN2Q86XP6 184 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF676Q8N7Q3 588 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 OR2A12Q8NGT7 310 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF587Q96SQ5 575 aaPredicted RBP16.72■□□□□ 0.27
SMPD1-201ENST00000342245 WNT5BQ9H1J7 359 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 SRMSQ9H3Y6 488 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 A0A087WWC5 75 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 BNIP3LO60238 219 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 BRINP1O60477 761 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 RPP14O95059 124 aaKnown RBP16.72■□□□□ 0.27
SMPD1-201ENST00000342245 ST6GAL1P15907 406 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 HSD17B7P56937 341 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 MOGAT2Q3SYC2 334 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 SLC22A25Q6T423 547 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 KDM8Q8N371 416 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 AMER3Q8N944 861 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 OR10AD1Q8NGE0 317 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 OR6K6Q8NGW6 343 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 SPOCK3Q9BQ16 436 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 NMNAT2Q9BZQ4 307 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 EIF5A2Q9GZV4 153 aaKnown RBP16.72■□□□□ 0.27
SMPD1-201ENST00000342245 CERS4Q9HA82 394 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 TAC3Q9UHF0 121 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 HS3ST2Q9Y278 367 aa16.72■□□□□ 0.27
SMPD1-201ENST00000342245 NUP210LQ5VU65 1888 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 LOC100509620A0A075B734 347 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 A0A1B0GW64 132 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 SMCO3A2RU48 225 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 RAB27BO00194 218 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 GPANK1O95872 356 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 NR2C1P13056 603 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 RPS4Y1P22090 263 aaKnown RBP16.71■□□□□ 0.27
SMPD1-201ENST00000342245 ZNF385CQ66K41 422 aaPredicted RBP16.71■□□□□ 0.27
SMPD1-201ENST00000342245 RPL7L1Q6DKI1 246 aaKnown RBP16.71■□□□□ 0.27
SMPD1-201ENST00000342245 SLC48A1Q6P1K1 146 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 OPN5Q6U736 354 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 C17orf99Q6UX52 265 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 PPP1R3BQ86XI6 285 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 CD300LFQ8TDQ1 290 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 ST7LQ8TDW4 575 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 ADAP2Q9NPF8 381 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 SIRT7Q9NRC8 400 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 TMED7Q9Y3B3 224 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 IER3IP1Q9Y5U9 82 aa16.71■□□□□ 0.27
SMPD1-201ENST00000342245 GLOD5A6NK44 160 aa16.71■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms