RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 IL21Q9HBE4 155 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 SLC22A7Q9Y694 548 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 IGHV3OR16-10A0A075B7F0 116 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 K7EPK0 472 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 GPR31O00270 319 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 TEAD1P28347 426 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 TRHRP34981 398 aaPredicted RBP7.09□□□□□ -1.28
SCN9A-201ENST00000303354 APOBEC1P41238 236 aaKnown RBP7.09□□□□□ -1.28
SCN9A-201ENST00000303354 CCR5P51681 352 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 RAB11AP62491 216 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.09□□□□□ -1.28
SCN9A-201ENST00000303354 ZNF691Q5VV52 312 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 LAIR1Q6GTX8 287 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 IDO2Q6ZQW0 420 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 FAM71E2Q8N5Q1 922 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 RNF128Q8TEB7 428 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 PTDSS2Q9BVG9 487 aa7.09□□□□□ -1.28
SCN9A-201ENST00000303354 COL16A1Q07092 1604 aaPredicted RBP7.09□□□□□ -1.28
SCN9A-201ENST00000303354 SPTY2D1-AS1A0A0U1RR47 76 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ATP6V1G1O75348 118 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ZNF181Q2M3W8 571 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 UBE2NLQ5JXB2 153 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PAQR6Q6TCH4 344 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FOXRED1Q96CU9 486 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-201ENST00000303354 COQ10AQ96MF6 247 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ZNF785A8K8V0 405 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 XRCC3O43542 346 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 SSX4O60224 188 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CDK4P11802 303 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CA6P23280 308 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MMP11P24347 488 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 DBPQ10586 325 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-201ENST00000303354 LAX1Q8IWV1 398 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 NRG4Q8WWG1 115 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PLA2G12AQ9BZM1 189 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GPR12P47775 334 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 NOVP48745 357 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 SPCS2Q15005 226 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ATP1A1-AS1Q5TC04 95 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FAM71E1Q6IPT2 247 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ACY3Q96HD9 319 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MMP25Q9NPA2 562 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GPR84Q9NQS5 396 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 A4GNTQ9UNA3 340 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 TIMM10BQ9Y5J6 103 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 SLCO1B1Q9Y6L6 691 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CHD4Q14839 1912 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 TMIGD3P0DMS9 266 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MAGEA5P43359 124 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FZD5Q13467 585 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 Q56UQ5 140 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 KCTD11Q693B1 232 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PRELID3BQ9Y3B1 194 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MTCH2Q9Y6C9 303 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 HMGN4O00479 90 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GPR171O14626 319 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GALNSP34059 522 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CLN3Q13286 438 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 TCEAL1Q15170 157 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GARNL3Q5VVW2 1013 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PRR27Q6MZM9 219 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 SLC7A5P1Q8MH63 180 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 EXTL1Q92935 676 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PIK3IP1Q96FE7 263 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FAM173AQ9BQD7 235 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 GPR87Q9BY21 358 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MFFQ9GZY8 342 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FUOMA2VDF0 154 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 P2RX6O15547 441 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 NDUFB3O43676 98 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FADS1O60427 444 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 FZD2Q14332 565 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 MSMO1Q15800 293 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 TAF9Q16594 264 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 DPY19L2P2Q6ZN68 376 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CPEB3Q8NE35 698 aaKnown RBP7.08□□□□□ -1.28
SCN9A-201ENST00000303354 K7EQS6 105 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PDGFAP04085 211 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 AADACP22760 399 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 TMBIM6P55061 237 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 RAB40BQ12829 278 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 COQ5Q5HYK3 327 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 KDM4DQ6B0I6 523 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 CATSPERDQ86XM0 798 aa7.08□□□□□ -1.28
SCN9A-201ENST00000303354 PITHD1Q9GZP4 211 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-201ENST00000303354 ARHGEF15O94989 841 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 RPL18Q07020 188 aaKnown RBP7.07□□□□□ -1.28
SCN9A-201ENST00000303354 TMEM43Q9BTV4 400 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 SAMD10Q9BYL1 202 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 CHST2Q9Y4C5 530 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 TAF1P21675 1872 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 IGHV3OR15-7A0A075B7D8 119 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 CSF1P09603 554 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 RNFT1Q5M7Z0 435 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 ALKAL2Q6UX46 152 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 SSX7Q7RTT5 188 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 OR2V1Q8NHB1 315 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 GPR78Q96P69 363 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 CACNA1SQ13698 1873 aa7.07□□□□□ -1.28
SCN9A-201ENST00000303354 ZNF320A2RRD8 509 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms