RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 GMPR2Q9P2T1 348 aaKnown RBP13.66□□□□□ -0.22
CLN3-229ENST00000567963 KLHL21Q9UJP4 597 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 AP3M1Q9Y2T2 418 aa13.66□□□□□ -0.22
CLN3-229ENST00000567963 A6NIZ1 184 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 EFCAB9A8MZ26 197 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 SLC22A2O15244 555 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 AVPP01185 164 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 IGHV2-5P01817 119 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 IFNW1P05000 195 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 LIPAP38571 399 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 SLC9A3P48764 834 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 RAP1BP61224 184 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 PPP1CBP62140 327 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 RAP1AP62834 184 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 ENDOGQ14249 297 aaKnown RBP13.65□□□□□ -0.22
CLN3-229ENST00000567963 ZNF774Q6NX45 483 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 RFPL4BQ6ZWI9 263 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 SYT9Q86SS6 491 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 POU5F2Q8N7G0 328 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.65□□□□□ -0.22
CLN3-229ENST00000567963 SEMA6DQ8NFY4 1073 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 RP9Q8TA86 221 aaKnown RBP13.65□□□□□ -0.22
CLN3-229ENST00000567963 ZFAND2BQ8WV99 257 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 RAB1CQ92928 201 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 TIMD4Q96H15 378 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 C4orf45Q96LM5 186 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 ELOVL3Q9HB03 270 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 CYSLTR2Q9NS75 346 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 ARMCX1Q9P291 453 aa13.65□□□□□ -0.22
CLN3-229ENST00000567963 NBEAL1Q6ZS30 2694 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 A0A087WUU8 490 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 A0A1W2PPL8 197 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 ZSCAN5BA6NJL1 495 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 H3BSA7 217 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 UBOX5O94941 541 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 SCG5P05408 212 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 ADH4P08319 380 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 MSR1P21757 451 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 TBPL2Q6SJ96 375 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 THSD4Q6ZMP0 1018 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 CBLL1Q75N03 491 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 ARPINQ7Z6K5 226 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 TEX29Q8N6K0 151 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 GEMIN6Q8WXD5 167 aaKnown RBP13.64□□□□□ -0.23
CLN3-229ENST00000567963 ACOT11Q8WXI4 607 aaPredicted RBP13.64□□□□□ -0.23
CLN3-229ENST00000567963 POLE4Q9NR33 117 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 CGGBP1Q9UFW8 167 aaPredicted RBP13.64□□□□□ -0.23
CLN3-229ENST00000567963 ZDHHC8Q9ULC8 765 aa13.64□□□□□ -0.23
CLN3-229ENST00000567963 LOC105371242A0A075B767 164 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 C12orf71A8MTZ7 269 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 CXCR6O00574 342 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 CDC42EP2O14613 210 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 PRSS23O95084 383 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 ZNF682O95780 498 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 ARHGDIAP52565 204 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 LIPEQ05469 1076 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 ARL9Q6T311 187 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 ZNF730Q6ZMV8 503 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 TMPRSS11FQ6ZWK6 438 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 MBOAT2Q6ZWT7 520 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 FAM156AQ8NDB6 213 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 OR13C2Q8NGS9 318 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 ZNF418Q8TF45 676 aaPredicted RBP13.63□□□□□ -0.23
CLN3-229ENST00000567963 DIRC2Q96SL1 478 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 WACQ9BTA9 647 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 TMPRSS13Q9BYE2 586 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 EGLN1Q9GZT9 426 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 GRHPRQ9UBQ7 328 aa13.63□□□□□ -0.23
CLN3-229ENST00000567963 A0A0G2JMP0 313 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 A0A0X1KG70 313 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 H7C1C5 153 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 COX5BP10606 129 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 LCN6P62502 163 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 GUCY1A3Q02108 690 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 SLC3A1Q07837 685 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 ZBED5Q49AG3 693 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 IFI44LQ53G44 452 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 SPRNQ5BIV9 151 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 USP43Q70EL4 1123 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 FKBP9P1Q75LS8 142 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 OR4M2Q8NGB6 313 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 HOPXQ9BPY8 73 aaPredicted RBP13.62□□□□□ -0.23
CLN3-229ENST00000567963 MSL2Q9HCI7 577 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 NDRG4Q9ULP0 352 aaKnown RBP13.62□□□□□ -0.23
CLN3-229ENST00000567963 PCDHB10Q9UN67 800 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 ADAM18Q9Y3Q7 739 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 TANC2Q9HCD6 1990 aa13.62□□□□□ -0.23
CLN3-229ENST00000567963 J3QLI3 93 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 NME4O00746 187 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 GSTA4O15217 222 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 AHCYL1O43865 530 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 RGS9O75916 674 aaPredicted RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 SERPINA1P01009 418 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 CD55P08174 381 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 CD14P08571 375 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 COX4I1P13073 169 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 ZNF26P17031 533 aaPredicted RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 EPHA1P21709 976 aa13.61□□□□□ -0.23
CLN3-229ENST00000567963 RPL4P36578 427 aaKnown RBP13.61□□□□□ -0.23
CLN3-229ENST00000567963 GPR4P46093 362 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms