RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CDAP32320 146 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 LIPAP38571 399 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 TPTEP56180 551 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 OR12D2P58182 307 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 ACTA2P62736 377 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 ACTG2P63267 376 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 KLRB1Q12918 225 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 MLLT11Q13015 90 aaPredicted RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 SF3B4Q15427 424 aaKnown RBP eCLIP9.91□□□□□ -0.822e-7■■■■■ 32.9
USP3-218ENST00000560202 PCK2Q16822 640 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 ACSF3Q4G176 576 aaPredicted RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 CDONQ4KMG0 1287 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 TEX30Q5JUR7 227 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 RIPPLY2Q5TAB7 128 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 C19orf48Q6RUI8 117 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 SYS1Q8N2H4 156 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 THEM6Q8WUY1 208 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 SNX33Q8WV41 574 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 WNT2BQ93097 391 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 TRIM63Q969Q1 353 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 YIPF6Q96EC8 236 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 MRPL48Q96GC5 212 aaKnown RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 GMPPAQ96IJ6 420 aaPredicted RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 C4orf36Q96KX1 117 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 OPALINQ96PE5 141 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 RBM24Q9BX46 236 aaKnown RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 LINC00470Q9BZP3 86 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 SLCO5A1Q9H2Y9 848 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 ISYNA1Q9NPH2 558 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 B3GAT2Q9NPZ5 323 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 GLRX2Q9NS18 164 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 BABAM2Q9NXR7 383 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 CRNNQ9UBG3 495 aaPredicted RBP9.91□□□□□ -0.82
USP3-218ENST00000560202 KCNG2Q9UJ96 466 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 ALPK2Q86TB3 2170 aa9.91□□□□□ -0.82
USP3-218ENST00000560202 OR6C65A6NJZ3 312 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 J3QLW9 94 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 PHYHO14832 338 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 MAGEB4O15481 346 aaPredicted RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 SS18L1O75177 396 aaPredicted RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 LALBAP00709 142 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 TPOP07202 933 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 SFTPCP11686 197 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 GABRA1P14867 456 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ZNF19P17023 458 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 EDNRAP25101 427 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 AGTR1P30556 359 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 GUCA1AP43080 201 aaPredicted RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 ZNF84P51523 738 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 TUBA1BP68363 451 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ACSM1Q08AH1 577 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 KCNMB1Q16558 191 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 CTF1Q16619 201 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 TSTQ16762 297 aaKnown RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 TP53I3Q53FA7 332 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 TSPO2Q5TGU0 170 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 NSUN5P2Q63ZY6 315 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 SLC18B1Q6NT16 456 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 RPTNQ6XPR3 784 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 SLC16A12Q6ZSM3 486 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 FOXL2NBQ6ZUU3 175 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 TUBA1AQ71U36 451 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 NUFIP2Q7Z417 695 aaKnown RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 KLBQ86Z14 1044 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ZNF454Q8N9F8 522 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 OR10H5Q8NGA6 315 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 APH1AQ96BI3 265 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ZNF837Q96EG3 531 aaPredicted RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 MED30Q96HR3 178 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ALKBH3Q96Q83 286 aaPredicted RBP9.9□□□□□ -0.82
USP3-218ENST00000560202 CDADC1Q9BWV3 514 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 CRLF2Q9HC73 371 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 POLE4Q9NR33 117 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 ASF1BQ9NVP2 202 aa9.9□□□□□ -0.82
USP3-218ENST00000560202 DNAJC13O75165 2243 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 BSNQ9UPA5 3926 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 CD8B2A6NJW9 211 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 PRR32B1ATL7 298 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 TMCC2O75069 709 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 WDR1O75083 606 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 KRT33AO76009 404 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 IGHV3-9P01782 118 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 CD36P16671 472 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 PTGER4P35408 488 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 TGFBR2P37173 567 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 CAPZA2P47755 286 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 RGS6P49758 472 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 EIF2B1Q14232 305 aaKnown RBP9.9□□□□□ -0.83
USP3-218ENST00000560202 SGCAQ16586 387 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 PRR30Q53SZ7 412 aaPredicted RBP9.9□□□□□ -0.83
USP3-218ENST00000560202 ZNF684Q5T5D7 378 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 VASH1Q7L8A9 365 aaPredicted RBP9.9□□□□□ -0.83
USP3-218ENST00000560202 LINGO2Q7L985 606 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 ZNF100Q8IYN0 542 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 SLC7A5P1Q8MH63 180 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 C9orf106Q8NAJ2 232 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 ANGPTL6Q8NI99 470 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 FAM57AQ8TBR7 257 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 CPT1CQ8TCG5 803 aa9.9□□□□□ -0.83
USP3-218ENST00000560202 ASB17Q8WXJ9 295 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms