RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C3orf18Q9UK00 162 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 MRPS28Q9Y2Q9 187 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 EXOSC1Q9Y3B2 195 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 CPAMD8Q8IZJ3 1885 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 TENM2Q9NT68 2774 aa3.11□□□□□ -1.91
LIMA1-208ENST00000551691 YLPM1P49750 1951 aaKnown RBP3.11□□□□□ -1.91
LIMA1-208ENST00000551691 HERC2O95714 4834 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 DNAH1Q9P2D7 4330 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ARPC4-TTLL3A0A0A6YYG9 625 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 A0A1B0GVL5 298 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 A0A1W2PNV4 684 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SMCO3A2RU48 225 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 PINLYPA6NC86 204 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 VSTM2BA6NLU5 285 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 NPIPA7E9PJI5 369 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 K7EQD1 137 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 KLRC4O43908 158 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 TIMM8AO60220 97 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 FCMRO60667 390 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 POP7O75817 140 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 KRT36O76013 467 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC25A14O95258 325 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 NPIPA8P0DM63 369 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 BCKDHAP12694 445 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ANXA8P13928 327 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 TPSB2P20231 275 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 TBXA2RP21731 343 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ACVR1BP36896 505 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 RPL13AP40429 203 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CSNK1DP48730 415 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CCT3P49368 545 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 THBS3P49746 956 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 RIDAP52758 137 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 STC1P52823 247 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 EMP2P54851 167 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SEC61GP60059 68 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ERVFC1-1P60608 527 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 MAXP61244 160 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 EWSR1Q01844 656 aaKnown RBP eCLIP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC10A7Q0GE19 358 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 TPSAB1Q15661 275 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC25A35Q3KQZ1 300 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC25A52Q3SY17 297 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 PTPN20Q4JDL3 420 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CTSL3PQ5NE16 218 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ANXA8L1Q5VT79 327 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 MEDAGQ5VYS4 303 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 HACD2Q6Y1H2 254 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 FRRS1Q6ZNA5 592 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 OOSP2Q86WS3 158 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC13A5Q86YT5 568 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC35F2Q8IXU6 374 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF781Q8N8C0 355 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 OR2T6Q8NHC8 308 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 RFESDQ8TAC1 157 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 NANPQ8TBE9 248 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 FAM81AQ8TBF8 368 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 MCUR1Q96AQ8 359 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CNRIP1Q96F85 164 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 PKNOX2Q96KN3 472 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 IMMP1LQ96LU5 166 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 RCHY1Q96PM5 261 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 FAM173AQ9BQD7 235 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 LLPHQ9BRT6 129 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 UTP23Q9BRU9 249 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CHRDL1Q9BU40 450 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 TRIM62Q9BVG3 475 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 IQCGQ9H095 443 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CLSTN2Q9H4D0 955 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SH2D2AQ9NP31 389 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 NANSQ9NR45 359 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 SLC17A5Q9NRA2 495 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 ZDHHC18Q9NUE0 388 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 KCNG2Q9UJ96 466 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 MRPS18CQ9Y3D5 142 aaKnown RBP3.1□□□□□ -1.91
LIMA1-208ENST00000551691 FBXO7Q9Y3I1 522 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 MALRD1Q5VYJ5 2156 aa3.1□□□□□ -1.91
LIMA1-208ENST00000551691 CSMD3Q7Z407 3707 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 COL7A1Q02388 2944 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 TRBV7-9A0A0J9YWB2 115 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 CXorf51AA0A1B0GTR3 108 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 FAM166BA8MTA8 275 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 ZNF724A8MTY0 619 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 NPIPB9F8W1W9 429 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 H0YIV9 168 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 PSMD11O00231 422 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 KMOO15229 486 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RNF13O43567 381 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 KHDRBS3O75525 346 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 CDK14O94921 469 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 KRT14P02533 472 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 H2BFMP0C1H6 154 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RNH1P13489 461 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 POU2F1P14859 743 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SDC1P18827 310 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 PCMT1P22061 227 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 IGFBP5P24593 272 aa3.09□□□□□ -1.91
LIMA1-208ENST00000551691 SPRP35270 261 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 RPL4P36578 427 aaKnown RBP3.09□□□□□ -1.91
LIMA1-208ENST00000551691 CAPGP40121 348 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms