RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CYSLTR2Q9NS75 346 aa11.98□□□□□ -0.49
SNHG1-213ENST00000540725 CGGBP1Q9UFW8 167 aaPredicted RBP11.98□□□□□ -0.49
SNHG1-213ENST00000540725 TIMM10BQ9Y5J6 103 aa11.98□□□□□ -0.49
SNHG1-213ENST00000540725 PKD1L1Q8TDX9 2849 aa11.98□□□□□ -0.49
SNHG1-213ENST00000540725 TRAV27A0A087WT01 109 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 A0A1W2PPL8 197 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 ISPDA4D126 451 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 UBOX5O94941 541 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 IFNA8P32881 189 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 LIPAP38571 399 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 GUCA1AP43080 201 aaPredicted RBP11.97□□□□□ -0.49
SNHG1-213ENST00000540725 COMPP49747 757 aaPredicted RBP11.97□□□□□ -0.49
SNHG1-213ENST00000540725 PCBD1P61457 104 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 SLC3A1Q07837 685 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 MAPRE2Q15555 327 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 MICU2Q8IYU8 434 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 LRRC75AQ8NAA5 344 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 OR2T12Q8NG77 320 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 OR51A7Q8NH64 312 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 GEMIN6Q8WXD5 167 aaKnown RBP11.97□□□□□ -0.49
SNHG1-213ENST00000540725 GCDHQ92947 438 aaPredicted RBP11.97□□□□□ -0.49
SNHG1-213ENST00000540725 RBM4Q9BWF3 364 aaKnown RBP11.97□□□□□ -0.49
SNHG1-213ENST00000540725 SUCNR1Q9BXA5 334 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 VIPAS39Q9H9C1 493 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 ELOVL3Q9HB03 270 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 SAR1AQ9NR31 198 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 GID8Q9NWU2 228 aa11.97□□□□□ -0.49
SNHG1-213ENST00000540725 LOC100653049A0A140TA62 436 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 TMEM89A2RUT3 159 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 A6NIZ1 184 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 KRT34O76011 436 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 CD55P08174 381 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 TROVE2P10155 538 aaKnown RBP eCLIP11.96□□□□□ -0.49
SNHG1-213ENST00000540725 MSR1P21757 451 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 FUT4P22083 530 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 GATA3P23771 443 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 YAP1P46937 504 aaKnown RBP11.96□□□□□ -0.49
SNHG1-213ENST00000540725 ARHGDIAP52565 204 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 RAP1BP61224 184 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 RAP1AP62834 184 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 SELENOWP63302 87 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 LCN2P80188 198 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 SF3A3Q12874 501 aaKnown RBP eCLIP11.96□□□□□ -0.496e-19■■■□□ 14.9
SNHG1-213ENST00000540725 FHL1Q13642 323 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 ENDOGQ14249 297 aaKnown RBP11.96□□□□□ -0.49
SNHG1-213ENST00000540725 SPRNQ5BIV9 151 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 ZMAT1Q5H9K5 638 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 NRMQ8IXM6 262 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 OFCC1Q8IZS5 231 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 PCYOX1LQ8NBM8 494 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 NANPQ8TBE9 248 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 C4orf45Q96LM5 186 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 DIRC2Q96SL1 478 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 SLC6A7Q99884 636 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 C7orf69Q9H7B7 122 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 MSL2Q9HCI7 577 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 MAN2C1Q9NTJ4 1040 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 UBAP1Q9NZ09 502 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 RHCGQ9UBD6 479 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 KLHL21Q9UJP4 597 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 ZDHHC8Q9ULC8 765 aa11.96□□□□□ -0.49
SNHG1-213ENST00000540725 NDRG4Q9ULP0 352 aaKnown RBP11.96□□□□□ -0.49
SNHG1-213ENST00000540725 ELOVL7A1L3X0 281 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 C12orf71A8MTZ7 269 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 H7C1C5 153 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 RRP9O43818 475 aaKnown RBP11.95□□□□□ -0.5
SNHG1-213ENST00000540725 TIMM8AO60220 97 aaPredicted RBP11.95□□□□□ -0.5
SNHG1-213ENST00000540725 IFNW1P05000 195 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 LIMS1P48059 325 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 LCN6P62502 163 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 PRKCDQ05655 676 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 TRAM2Q15035 370 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 ANKDD1AQ495B1 522 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 MTX3Q5HYI7 312 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 ARL9Q6T311 187 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 VTCN1Q7Z7D3 282 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 SYT9Q86SS6 491 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 OAFQ86UD1 273 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 BPIFB2Q8N4F0 458 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 C3orf56Q8N813 242 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 OR13C2Q8NGS9 318 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 ST7LQ8TDW4 575 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 LZICQ8WZA0 190 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 FNDC11Q9BVV2 318 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 EMC7Q9NPA0 242 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 POLE4Q9NR33 117 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 FGFR1OP2Q9NVK5 253 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 DCAF16Q9NXF7 216 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 OPN4Q9UHM6 478 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 SNX13Q9Y5W8 968 aa11.95□□□□□ -0.5
SNHG1-213ENST00000540725 EFCAB9A8MZ26 197 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 J3KTA2 159 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 ABHD16AO95870 558 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 FSHBP01225 129 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 SCG5P05408 212 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 SLC9A3P48764 834 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 TNFAIP6P98066 277 aaPredicted RBP11.94□□□□□ -0.5
SNHG1-213ENST00000540725 PSG7Q13046 419 aa11.94□□□□□ -0.5
SNHG1-213ENST00000540725 HNRNPA0Q13151 305 aaKnown RBP11.94□□□□□ -0.5
SNHG1-213ENST00000540725 ZER1Q7Z7L7 766 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms