RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 LINC00173Q6ZV60 143 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TMEM179Q6ZVK1 233 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 STRADAQ7RTN6 431 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 LHFPL3Q86UP9 236 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 ZCCHC7Q8N3Z6 543 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 ZNF561Q8N587 486 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 CEP112Q8N8E3 955 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 UBALD1Q8TB05 177 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TMEM54Q969K7 222 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 MED8Q96G25 268 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 RARRES2Q99969 163 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 NDFIP1Q9BT67 221 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 TMEM59Q9BXS4 323 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 MRPL37Q9BZE1 423 aaKnown RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 ROPN1BQ9BZX4 212 aaPredicted RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 NT5C3AQ9H0P0 336 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 OPN4Q9UHM6 478 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 BRD4O60885 1362 aaPredicted RBP2.18□□□□□ -2.06
CD44-233ENST00000531141 PCM1Q15154 2024 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 CCDC18Q5T9S5 1454 aa2.18□□□□□ -2.06
CD44-233ENST00000531141 MN1Q10571 1320 aaPredicted RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 CICQ96RK0 1608 aaPredicted RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 PHRF1Q9P1Y6 1649 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 NALCNQ8IZF0 1738 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 MYO5BQ9ULV0 1848 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 FAM240BA0A1B0GVZ2 78 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 CIB4A0PJX0 185 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 TMEM150BA6NC51 233 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 GOSR2O14653 212 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 PSTPIP1O43586 416 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SURF6O75683 361 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 EIF3GO75821 320 aaKnown RBP eCLIP2.17□□□□□ -2.06
CD44-233ENST00000531141 ETS2P15036 469 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 CALRP27797 417 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 SERPINB5P36952 375 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 RPL23AP62750 156 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 LINC00483Q53H64 154 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 CENPPQ6IPU0 288 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 NANOGP8Q6NSW7 305 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 ZNF493Q6ZR52 646 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 RGS9BPQ6ZS82 235 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 STPG2Q8N412 459 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 C15orf56Q8N910 161 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 FRZBQ92765 325 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 C12orf42Q96LP6 360 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SPIN2AQ99865 258 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SPIN2BQ9BPZ2 258 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SCRT1Q9BWW7 348 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 PARP12Q9H0J9 701 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 ZNF430Q9H8G1 570 aaPredicted RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 ZNF282Q9UDV7 671 aaPredicted RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 IKZF2Q9UKS7 526 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 CEMIPQ8WUJ3 1361 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 KIAA0232Q92628 1395 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 CCDC141Q6ZP82 1450 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 TOPAZ1Q8N9V7 1692 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 ADAMTS7Q9UKP4 1686 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 PKD1L2Q7Z442 2459 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 XRN1Q8IZH2 1706 aaKnown RBP2.17□□□□□ -2.06
CD44-233ENST00000531141 BCL9O00512 1426 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SSH2Q76I76 1423 aa2.17□□□□□ -2.06
CD44-233ENST00000531141 SPTBN5Q9NRC6 3674 aaKnown RBP2.16□□□□□ -2.06
CD44-233ENST00000531141 BRCA2P51587 3418 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 TNRC6CQ9HCJ0 1690 aaKnown RBP2.16□□□□□ -2.06
CD44-233ENST00000531141 ATP7BP35670 1465 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 H0YHG0 523 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ENTPD5O75356 428 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 C6orf47O95873 294 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 TLX1NBP0CAT3 122 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 FOLR1P15328 257 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 PSMC3P17980 439 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 RORCP51449 518 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 KCNJ2P63252 427 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ERCC8Q13216 396 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 PPIL2Q13356 520 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 MOBPQ13875 183 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 VAX1Q5SQQ9 334 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 PHYHD1Q5SRE7 291 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 HES5Q5TA89 166 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 DUX4L9Q6RFH8 374 aaPredicted RBP2.16□□□□□ -2.06
CD44-233ENST00000531141 Q6ZR03 302 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 SMIM5Q71RC9 77 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 RUFY3Q7L099 469 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ABHD13Q7L211 337 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 TBC1D21Q8IYX1 336 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 TTC5Q8N0Z6 440 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ARL6IP6Q8N6S5 226 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 EIF1ADQ8N9N8 165 aaKnown RBP2.16□□□□□ -2.06
CD44-233ENST00000531141 OR8J1Q8NGP2 316 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 OR1L6Q8NGR2 347 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 OR4S2Q8NH73 311 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 LKAAEAR1Q8TD35 194 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 DEDD2Q8WXF8 326 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 P2RX4Q99571 388 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ZBTB18Q99592 522 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 CHAC1Q9BUX1 264 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ISYNA1Q9NPH2 558 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 ETNK2Q9NVF9 386 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 EXTL2Q9UBQ6 330 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 RANBP2P49792 3224 aaKnown RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms