RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 CCDC163A0A0D9SF12 145 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 MSTNO14793 375 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 IL32P24001 234 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 CTGFP29279 349 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 GCH1P30793 250 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 PPICP45877 212 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 RUNX2Q13950 521 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 ACKR1Q16570 336 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 MALSU1Q96EH3 234 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.6□□□□□ -0.39
SYNPO-205ENST00000522122 QPCTLQ9NXS2 382 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 NYNRINQ9P2P1 1898 aaKnown RBP12.6□□□□□ -0.39
SYNPO-205ENST00000522122 BOKQ9UMX3 212 aaPredicted RBP12.6□□□□□ -0.39
SYNPO-205ENST00000522122 TRAV1-2A0A0B4J238 106 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 A0A1B0GX78 115 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 C2orf72A6NCS6 295 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 ICAM2P13598 275 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 AGERQ15109 404 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 LPAL2Q16609 132 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 RABEPKQ7Z6M1 372 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 HSD17B8Q92506 261 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 TSSK2Q96PF2 358 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 IL20Q9NYY1 176 aa12.6□□□□□ -0.39
SYNPO-205ENST00000522122 MCRIP1C9JLW8 97 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 ZNF749O43361 778 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 ACTL6BO94805 426 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 EXOSC2Q13868 293 aaKnown RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 C9orf135Q5VTT2 229 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 C16orf52Q8NHV5 167 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 SGK3Q96BR1 496 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 SSX3Q99909 188 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 TCEAL7Q9BRU2 100 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 POFUT1Q9H488 388 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 HRASLSQ9HDD0 168 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 ZNF346Q9UL40 294 aaKnown RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 MT-CO2P00403 227 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 SLC2A1P11166 492 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 NPY4RP50391 375 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 GJC3Q8NFK1 279 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 MARC2Q969Z3 335 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 TEX101Q9BY14 249 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 C6orf106Q9H6K1 298 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 SIRT3Q9NTG7 399 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 WSB2Q9NYS7 404 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 A0A0B4J203 849 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 LOC107986453A0A1B0GWG9 222 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 ZNF728P0DKX0 622 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 CD27P26842 260 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 IFITM2Q01629 132 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 RPL18Q07020 188 aaKnown RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 FAM27D1Q5T7N8 215 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 CA13Q8N1Q1 262 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 ZNF845Q96IR2 970 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 CHRNA9Q9UGM1 479 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 MBD1Q9UIS9 605 aaPredicted RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 A0A1B0GUH1 482 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 AKR7A3O95154 331 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 OMGP23515 440 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 SSR4P51571 173 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 RBM39Q14498 530 aaKnown RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 TMEM240Q5SV17 173 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 OR10R2Q8NGX6 335 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 FKRPQ9H9S5 495 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 TMEM100Q9NV29 134 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 TAS2R4Q9NYW5 299 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 DNAJB11Q9UBS4 358 aa12.59□□□□□ -0.39
SYNPO-205ENST00000522122 NXT1Q9UKK6 140 aaKnown RBP12.59□□□□□ -0.39
SYNPO-205ENST00000522122 RPS10-NUDT3A0A1W2PQS6 291 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 IL2RGP31785 369 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 RPS10P46783 165 aaKnown RBP12.58□□□□□ -0.39
SYNPO-205ENST00000522122 DOC2BQ14184 412 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 WDR5BQ86VZ2 330 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 PRSS35Q8N3Z0 413 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 OR9K2Q8NGE7 335 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 EMC6Q9BV81 110 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 GPATCH2Q9NW75 528 aa12.58□□□□□ -0.39
SYNPO-205ENST00000522122 PRAMEF25A6NGN4 478 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 TOR1AO14656 332 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 CNR1P21554 472 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 APOBEC1P41238 236 aaKnown RBP12.58□□□□□ -0.4
SYNPO-205ENST00000522122 RPS27P42677 84 aaKnown RBP12.58□□□□□ -0.4
SYNPO-205ENST00000522122 EPHA4P54764 986 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 RAB4BP61018 213 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 AANATQ16613 207 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 RHOUQ7L0Q8 258 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 SECTM1Q8WVN6 248 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 MRPL38Q96DV4 380 aaKnown RBP12.58□□□□□ -0.4
SYNPO-205ENST00000522122 SLAMF7Q9NQ25 335 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 SDHAF2Q9NX18 166 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 GPR171O14626 319 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 ALOX12BO75342 701 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 CD79BP40259 229 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 LIMS1P48059 325 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 BTG2P78543 158 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 CLEC1AQ8NC01 280 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 RAB9BQ9NP90 201 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 NEUROG3Q9Y4Z2 214 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 KCNE3Q9Y6H6 103 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 G3V3Y1 287 aa12.58□□□□□ -0.4
SYNPO-205ENST00000522122 CCSO14618 274 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms