RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DYNC1I1O14576 645 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 RBFOX2O43251 390 aaKnown RBP eCLIP1.14□□□□□ -2.23
SMC4-220ENST00000488017 CBR3O75828 277 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 SLC25A14O95258 325 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 CST1P01037 141 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 IGHDP01880 384 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 LINC00869P0C866 280 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 IGHV1-8P0DP01 117 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 MCF2P10911 925 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 ZNF43P17038 809 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 NCF2P19878 526 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 TCN2P20062 427 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 CHMLP26374 656 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 NAMPTP43490 491 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 CCNHP51946 323 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 RND2P52198 227 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 RPL23AP62750 156 aaKnown RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 SLC25A11Q02978 314 aaKnown RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 MXD1Q05195 221 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 LOXL1Q08397 574 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 BST2Q10589 180 aaKnown RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 PON2Q15165 354 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 IGFBP7Q16270 282 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 CCNJQ5T5M9 372 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 ANKRD26P1Q6NSI1 321 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 ARL9Q6T311 187 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 FBXW12Q6X9E4 464 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 Q6ZSR3 168 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 RUFY3Q7L099 469 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 UBE2J2Q8N2K1 259 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 LINC00304Q8N9R0 145 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 NOXO1Q8NFA2 376 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 B3GNT7Q8NFL0 401 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 OR13C2Q8NGS9 318 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 OR10J6PQ8NGY7 276 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 OR5B3Q8NH48 314 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 SLC7A13Q8TCU3 470 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 LKAAEAR1Q8TD35 194 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 ABHD3Q8WU67 409 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 FBXO32Q969P5 355 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 DUS3LQ96G46 650 aaKnown RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 SERPINB12Q96P63 405 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 ATP5SQ99766 215 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 FOXC2Q99958 501 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 SYNDIG1Q9H7V2 258 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 UBE2ZQ9H832 354 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 METTL7AQ9H8H3 244 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 HMG20AQ9NP66 347 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 FGF20Q9NP95 211 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 GPATCH2LQ9NWQ4 482 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 UVRAGQ9P2Y5 699 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 EXTL2Q9UBQ6 330 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 LSM7Q9UK45 103 aaKnown RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 ING4Q9UNL4 249 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 DENND4AQ7Z401 1863 aa1.14□□□□□ -2.23
SMC4-220ENST00000488017 COL27A1Q8IZC6 1860 aaPredicted RBP1.14□□□□□ -2.23
SMC4-220ENST00000488017 PRDM2Q13029 1718 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 K7EM74 188 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 MRPS12O15235 138 aaKnown RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 RAD51BO15315 384 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 ZNF207O43670 478 aaKnown RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 EEDO75530 441 aaKnown RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 RP2O75695 350 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 PALMO75781 387 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 CLPXO76031 633 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 TSPAN13O95857 204 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 HLA-DPB1P04440 258 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 SLC2A3P11169 496 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 AQP2P41181 271 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 NSG1P42857 185 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 KIR3DL2P43630 455 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 SLC11A1P49279 550 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 SSR4P51571 173 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 ACTR3P61158 418 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 ARG2P78540 354 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 TCP10Q12799 353 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 DDX39BQ13838 428 aaKnown RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 RCAN2Q14206 197 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 RABL6Q3YEC7 729 aaPredicted RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 VPS26BQ4G0F5 336 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 CEP55Q53EZ4 464 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 FAM78AQ5JUQ0 283 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 METTL21CQ5VZV1 264 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 SAXO2Q658L1 398 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 RNASEKQ6P5S7 137 aaKnown RBP1.13□□□□□ -2.23
SMC4-220ENST00000488017 SASS6Q6UVJ0 657 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 TMEM205Q6UW68 189 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 CCDC73Q6ZRK6 1079 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 PRSS58Q8IYP2 241 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 LGI3Q8N145 548 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 PDIK1LQ8N165 341 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 LIX1Q8N485 282 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 FBXL13Q8NEE6 735 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 OR9K2Q8NGE7 335 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 ZNF502Q8TBZ5 544 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 PIBF1Q8WXW3 757 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 KIFAP3Q92845 792 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 CCDC126Q96EE4 140 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 OR5B12Q96R08 314 aa1.13□□□□□ -2.23
SMC4-220ENST00000488017 SLC29A1Q99808 456 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms