RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 UBE2FQ969M7 185 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CIB3Q96Q77 187 aaPredicted RBP12.23□□□□□ -0.45
USP40-208ENST00000450966 OR52D1Q9H346 318 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 CSNK1G1Q9HCP0 422 aa12.23□□□□□ -0.45
USP40-208ENST00000450966 LOC100289279A0A1B0GTE1 492 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 TMEM212A6NML5 194 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 E5RGE8 158 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 HOXB9P17482 250 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 MPGP29372 298 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 ACAA2P42765 397 aaKnown RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 PPP1CBP62140 327 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 LGALSLQ3ZCW2 172 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 CNTN4Q8IWV2 1026 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 CSNK1A1LQ8N752 337 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 TMEM40Q8WWA1 233 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 REEP6Q96HR9 211 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 NSG2Q9Y328 171 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 RRP8O43159 456 aaKnown RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 UGDHO60701 494 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SGCAQ16586 387 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 RIPPLY2Q5TAB7 128 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 WDR88Q6ZMY6 472 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 ZNF611Q8N823 705 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 CYB561A3Q8NBI2 242 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 APIPQ96GX9 242 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 ZBP1Q9H171 429 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 C7orf77A4D0Y5 90 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SCGB2A1O75556 95 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 CST4P01036 141 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 FOLR3P41439 243 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 ERVFRD-1P60508 538 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 UBE2V2Q15819 145 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 OR4A47Q6IF82 309 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 OR5D14Q8NGL3 314 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 PELI2Q9HAT8 420 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 CYSLTR2Q9NS75 346 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 EXOGQ9Y2C4 368 aaKnown RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 B4DEV8 164 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SRMP19623 302 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SLC35A1P78382 337 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 C1orf61Q13536 156 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 RPS26P11Q5JNZ5 115 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 MRM1Q6IN84 353 aaKnown RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 LYG2Q86SG7 212 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 APCDD1Q8J025 514 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 TMEM123Q8N131 208 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 CRYGNQ8WXF5 182 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 PGAM5Q96HS1 289 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 OR1F2PQ96R84 312 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 GSX1Q9H4S2 264 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 RHBDD3Q9Y3P4 386 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 NUP98P52948 1817 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SLC16A7O60669 478 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 INHBBP09529 407 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 PNRC1Q12796 327 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 TPBGQ13641 420 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 SERTAD2Q14140 314 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 MIDNQ504T8 468 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 PDLIM3Q53GG5 364 aaPredicted RBP12.22□□□□□ -0.45
USP40-208ENST00000450966 CMTM2Q8TAZ6 248 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 PDXPQ96GD0 296 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 NIPSNAP1Q9BPW8 284 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 MIXL1Q9H2W2 232 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 TP53TG5Q9Y2B4 290 aa12.22□□□□□ -0.45
USP40-208ENST00000450966 TRBV4-1A0A0J9YWV2 114 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 MAML2Q8IZL2 1156 aaPredicted RBP12.21□□□□□ -0.45
USP40-208ENST00000450966 LRRC25Q8N386 305 aaPredicted RBP12.21□□□□□ -0.45
USP40-208ENST00000450966 DEFB123Q8N688 67 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 OR51F2Q8NH61 342 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 TPSD1Q9BZJ3 242 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 KCNK12Q9HB15 430 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 LINC01553A4QN01 128 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 MFNGO00587 321 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 HSBP1O75506 76 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 AADACP22760 399 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 GRB2P62993 217 aaKnown RBP12.21□□□□□ -0.45
USP40-208ENST00000450966 ECH1Q13011 328 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 MLC1Q15049 377 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 TMEM201Q5SNT2 666 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 LGI3Q8N145 548 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 OR5AR1Q8NGP9 310 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 IL22RA2Q969J5 263 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 IGSF8Q969P0 613 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 NOX4Q9NPH5 578 aa12.21□□□□□ -0.45
USP40-208ENST00000450966 A6NDN8 102 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 LRP3O75074 770 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 BMP5P22003 454 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 CD38P28907 300 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 SULT1A1P50225 295 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 MALLQ13021 153 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 LTB4RQ15722 352 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 ZNF765Q7L2R6 523 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 ZNF761Q86XN6 746 aaPredicted RBP12.21□□□□□ -0.46
USP40-208ENST00000450966 TMEM25Q86YD3 366 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 OR51A4Q8NGJ6 313 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 TMEM239Q8WW34 195 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 KHSRPQ92945 711 aaKnown RBP eCLIP12.21□□□□□ -0.466e-11■■□□□ 13.4
USP40-208ENST00000450966 C2orf50Q96LR7 162 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 GAL3ST2Q9H3Q3 398 aa12.21□□□□□ -0.46
USP40-208ENST00000450966 MARCH4Q9P2E8 410 aaPredicted RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms