RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 FAM227AF5H4B4 570 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 TSTD3H0UI37 97 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 PRAF2O60831 178 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 IGKV3-11P04433 115 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 LINC00032P0C843 101 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CLUP10909 449 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 PSMB4P28070 264 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 MPGP29372 298 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CCR8P51685 355 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 FOXA1P55317 472 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CARD18P57730 90 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 ARF3P61204 181 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RAP1AP62834 184 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RBBP4Q09028 425 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 MADCAM1Q13477 382 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 TSNQ15631 228 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 ZSWIM7Q19AV6 140 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SLC36A2Q495M3 483 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 ATP6AP1LQ52LC2 224 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 EXOSC6Q5RKV6 272 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RPS19BP1Q86WX3 136 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 MEX3DQ86XN8 651 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 FAM71CQ8NEG0 241 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SLC24A4Q8NFF2 622 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 OR9Q1Q8NGQ5 310 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 OR13C3Q8NGS6 347 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 FBXO17Q96EF6 278 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SLC35A4Q96G79 324 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SEC11CQ9BY50 192 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 VN1R1Q9GZP7 353 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CHST5Q9GZS9 411 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CACYBPQ9HB71 228 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SIRT7Q9NRC8 400 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 PLA2G3Q9NZ20 509 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 NTMQ9P121 344 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 GOLT1BQ9Y3E0 138 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 WDR87Q6ZQQ6 2873 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 ZNF593O00488 134 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 EMC8O43402 210 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 FADS1O60427 444 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SCN2BO60939 215 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 KHDRBS3O75525 346 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 HPXP02790 462 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 UBBP0CG47 229 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 UBCP0CG48 685 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 LSM6P62312 80 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RPS27AP62979 156 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 UBA52P62987 128 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 NAE1Q13564 534 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 TOMM34Q15785 309 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 ACKR1Q16570 336 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CDPF1Q6NVV7 123 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 CFAP206Q8IYR0 622 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RNF152Q8N8N0 203 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 OR52P1PQ8NH57 321 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 HIST1H2BAQ96A08 127 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 MALSU1Q96EH3 234 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 PHF21BQ96EK2 531 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 C1QTNF3Q9BXJ4 246 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 BCO1Q9HAY6 547 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 FAM60AQ9NP50 221 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 VAPAQ9P0L0 249 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 STOX2Q9P2F5 926 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 RPS6KB2Q9UBS0 482 aa6.54□□□□□ -1.36
ZNF540-202ENST00000343599 SAMD4AQ9UPU9 718 aaKnown RBP6.54□□□□□ -1.36
ZNF540-202ENST00000343599 TMEM72A0PK05 275 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 TRAPPC13A5PLN9 417 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 LDLRAD4O15165 306 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 LILRA1O75019 489 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 HOXB5P09067 269 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 SLC35G6P0C7Q6 338 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 NQO2P16083 231 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 HOXA5P20719 270 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 OTX2P32243 289 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 RFX3P48380 749 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 TAS2R39P59534 338 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 TRAM1Q15629 374 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 NSDHLQ15738 373 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 RAB6CQ53S08 254 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.53□□□□□ -1.36
ZNF540-202ENST00000343599 MEDAGQ5VYS4 303 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 C22orf42Q6IC83 251 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 LRRC28Q86X40 367 aaPredicted RBP6.53□□□□□ -1.36
ZNF540-202ENST00000343599 C1orf174Q8IYL3 243 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 C17orf78Q8N4C9 275 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 CCDC54Q8NEL0 328 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 TMEM185AQ8NFB2 350 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 OR4Q3Q8NH05 313 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 BRIX1Q8TDN6 353 aaKnown RBP6.53□□□□□ -1.36
ZNF540-202ENST00000343599 GNPDA2Q8TDQ7 276 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 ACOT11Q8WXI4 607 aaPredicted RBP6.53□□□□□ -1.36
ZNF540-202ENST00000343599 S100PBPQ96BU1 408 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 EFCAB11Q9BUY7 163 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 TEX12Q9BXU0 123 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 RAB6CQ9H0N0 254 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 SLC25A19Q9HC21 320 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 SMCO4Q9NRQ5 59 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 PARPBPQ9NWS1 579 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 MGAT4CQ9UBM8 478 aa6.53□□□□□ -1.36
ZNF540-202ENST00000343599 ATG4BQ9Y4P1 393 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms