RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NTF3P20783 257 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 SQSTM1Q13501 440 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 CST6Q15828 149 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 OR6S1Q8NH40 331 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 STACQ99469 402 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 RAB6CQ9H0N0 254 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 SLC25A43Q8WUT9 341 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 FKRPQ9H9S5 495 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 NKX6-3A6NJ46 265 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ALDOCP09972 364 aaKnown RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 F3P13726 295 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF787Q6DD87 383 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 RHOUQ7L0Q8 258 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 GRAMD2AQ8IUY3 354 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 LKAAEAR1Q8TD35 194 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 MTCH1Q9NZJ7 389 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ARL2-SNX15V9GYD0 113 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 A0A1B0GTW7 788 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ST8SIA5O15466 376 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 BMI1P35226 326 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 GABREP78334 506 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 MUCL1Q96DR8 90 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 MAP6Q96JE9 813 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 DOK3Q7L591 496 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ABI3BPQ7Z7G0 1075 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 SMIM4Q8WVI0 70 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF778Q96MU6 729 aa13.16□□□□□ -0.3
COL7A1-201ENST00000328333 NDRG4Q9ULP0 352 aaKnown RBP13.16□□□□□ -0.3
COL7A1-201ENST00000328333 SMIM17P0DL12 118 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 AANATQ16613 207 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SPRED3Q2MJR0 410 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 PDZD11Q5EBL8 140 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 TOMM20LQ6UXN7 152 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SLC16A14Q7RTX9 510 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 NME2P1O60361 137 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SORBS2O94875 1100 aaKnown RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 FOXK2Q01167 660 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 MANEAQ5SRI9 462 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 OR2G6Q5TZ20 316 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 OR5AP2Q8NGF4 316 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 PIGLQ9Y2B2 252 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 CCDC187A0A096LP49 1063 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ORM1P02763 201 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 OPN1MWP04001 364 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 OPN1MW2P0DN77 364 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 OPN1MW3P0DN78 364 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 MMP15P51511 669 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 MFAP5Q13361 173 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SMN1Q16637 294 aaKnown RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 HAGHQ16775 308 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 PNLIPRP3Q17RR3 467 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 LHX4Q969G2 390 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ATOH8Q96SQ7 321 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SUSD5O60279 629 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 RAD1O60671 282 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF354AO60765 605 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 F2RP25116 425 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 CLPPQ16740 277 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ZFPM2Q8WW38 1151 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SEC22AQ96IW7 307 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ZNF768Q9H5H4 540 aaKnown RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 GBF1Q92538 1859 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ZFAND5O76080 213 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SRYQ05066 204 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 CDONQ4KMG0 1287 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SLC35B3Q9H1N7 401 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 TMEM88BA6NKF7 163 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 BCL6P41182 706 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 MAP2K6P52564 334 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 SIM1P81133 766 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-201ENST00000328333 DEFB115Q30KQ5 88 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 TMEM151BQ8IW70 566 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ARHGAP9Q9BRR9 750 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 GDE1Q9NZC3 331 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 CA12O43570 354 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 PMP2P02689 132 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 HNF1AP20823 631 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 FAM189BP81408 668 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 ZXDBP98169 803 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 CLEC14AQ86T13 490 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 IL22RA1Q8N6P7 574 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 RASD2Q96D21 266 aa13.15□□□□□ -0.3
COL7A1-201ENST00000328333 WDR81Q562E7 1941 aa13.15□□□□□ -0.31
COL7A1-201ENST00000328333 A0A1W2PPQ1 181 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF732B4DXR9 585 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 HTR5AP47898 357 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 DHODHQ02127 395 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 PARD6AQ9NPB6 346 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ST8SIA2Q92186 375 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 UCN3Q969E3 161 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 IGSF21Q96ID5 467 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 WDR61Q9GZS3 305 aaKnown RBP13.14□□□□□ -0.31
COL7A1-201ENST00000328333 FAM171A2A8MVW0 826 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 CNMDO75829 334 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 LYG2Q86SG7 212 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 FLVCR1Q9Y5Y0 555 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF814B7Z6K7 855 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 K7ERQ8 282 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 NXPH2O95156 264 aa13.14□□□□□ -0.31
COL7A1-201ENST00000328333 BIDP55957 195 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms