RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 C11orf40Q8WZ69 217 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 KISS1RQ969F8 398 aaPredicted RBP10.8□□□□□ -0.68
LINC00339-213ENST00000642137 CNBD2Q96M20 576 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 KCNN2Q9H2S1 579 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 PLCXD1Q9NUJ7 323 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 MRPS18AQ9NVS2 196 aaKnown RBP10.8□□□□□ -0.68
LINC00339-213ENST00000642137 MRPL22Q9NWU5 206 aaKnown RBP10.8□□□□□ -0.68
LINC00339-213ENST00000642137 GALNT8Q9NY28 637 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 KCNG2Q9UJ96 466 aa10.8□□□□□ -0.68
LINC00339-213ENST00000642137 CLEC18AA5D8T8 446 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 NKX2-6A6NCS4 301 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 ZNF593O00488 134 aaPredicted RBP10.79□□□□□ -0.68
LINC00339-213ENST00000642137 TMCC2O75069 709 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 RAD51DO75771 328 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 AGFG2O95081 481 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 MPZL1O95297 269 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 GPANK1O95872 356 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 CST2P09228 141 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 MSR1P21757 451 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 IL32P24001 234 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 SRSF1Q07955 248 aaKnown RBP eCLIP10.79□□□□□ -0.68
LINC00339-213ENST00000642137 DBPQ10586 325 aaPredicted RBP10.79□□□□□ -0.68
LINC00339-213ENST00000642137 POU4F2Q12837 409 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 PCK2Q16822 640 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 TBRG1Q3YBR2 411 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 KLHL22Q53GT1 634 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 LAIR2Q6ISS4 152 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 KRT80Q6KB66 452 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 KLHL24Q6TFL4 600 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 CLEC18BQ6UXF7 455 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 SHFQ7M4L6 423 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 DPPA2Q7Z7J5 298 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 SYT9Q86SS6 491 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 SKA3Q8IX90 412 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 TIGD4Q8IY51 512 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 CLEC18CQ8NCF0 446 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 OR10H5Q8NGA6 315 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 ZMYND19Q96E35 227 aaPredicted RBP10.79□□□□□ -0.68
LINC00339-213ENST00000642137 FOXN4Q96NZ1 517 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 OBP2BQ9NPH6 170 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 SLC17A5Q9NRA2 495 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 EXOGQ9Y2C4 368 aaKnown RBP10.79□□□□□ -0.68
LINC00339-213ENST00000642137 HCFC1P51610 2035 aa10.79□□□□□ -0.68
LINC00339-213ENST00000642137 KALRNO60229 2985 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 A0A096LPE4 126 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 ARPC4-TTLL3A0A0A6YYG9 625 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 A0A1W2PPZ6 126 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 TVP23AA6NH52 213 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 C12orf71A8MTZ7 269 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SBK2P0C263 348 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 B4GALT1P15291 398 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 PPP3CBP16298 524 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 UGT2B10P36537 528 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 MTNR1AP48039 350 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 ENTPD1P49961 510 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 PCBD1P61457 104 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 TFF3Q07654 80 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 ENDOGQ14249 297 aaKnown RBP10.78□□□□□ -0.68
LINC00339-213ENST00000642137 TSC22D1Q15714 1073 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SMN1Q16637 294 aaKnown RBP10.78□□□□□ -0.68
LINC00339-213ENST00000642137 MEP1BQ16820 701 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SLC36A2Q495M3 483 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 TIMM23BQ5SRD1 257 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 UGT2A3Q6UWM9 527 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 B3GLCTQ6Y288 498 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SSX8Q7RTT4 187 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SLC16A14Q7RTX9 510 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SLC16A9Q7RTY1 509 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 LRRC18Q8N456 261 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 WDR31Q8NA23 367 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 HSD17B8Q92506 261 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 INTS14Q96SY0 518 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SH3GL3Q99963 347 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 ZNF416Q9BWM5 594 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 CDADC1Q9BWV3 514 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 YTHDF1Q9BYJ9 559 aaKnown RBP10.78□□□□□ -0.68
LINC00339-213ENST00000642137 YIPF3Q9GZM5 350 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 WDR76Q9H967 626 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 AMBNQ9NP70 447 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 UBAP1Q9NZ09 502 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 AMDHD2Q9Y303 409 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 PCDHGB1Q9Y5G3 927 aa10.78□□□□□ -0.68
LINC00339-213ENST00000642137 SMG1Q96Q15 3661 aaKnown RBP10.78□□□□□ -0.68
LINC00339-213ENST00000642137 IRGMA1A4Y4 181 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 OR5H1A6NKK0 313 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 SEC14L2O76054 403 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 WNT11O96014 354 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 CCDC159P0C7I6 412 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 DBTP11182 482 aaKnown RBP10.77□□□□□ -0.69
LINC00339-213ENST00000642137 HOXC12P31275 282 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 ATP6V1E1P36543 226 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 ARR3P36575 388 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 PEX19P40855 299 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 SLC15A1P46059 708 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 UBE2NP61088 152 aaKnown RBP10.77□□□□□ -0.69
LINC00339-213ENST00000642137 ADAM8P78325 824 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 SORDQ00796 357 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 ZNF91Q05481 1191 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 RAB40BQ12829 278 aa10.77□□□□□ -0.69
LINC00339-213ENST00000642137 AQP6Q13520 282 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms