RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 A0A0B4J2A0 478 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 IGHV7-4-1A0A0J9YVY3 117 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CENPVL3A0A0U1RRI6 287 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM120BA0PK00 339 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 C5orf63A6NC05 138 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCDC182A6NF36 153 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF98A6NK75 572 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 NCBP2LA6PVI3 153 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 BTNL10A8MVZ5 291 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 F6UB75 175 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 K7EQM0 130 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GOSR2O14653 212 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 MGRN1O60291 552 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 DPM1O60762 260 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TOM1O60784 492 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SMPD2O60906 423 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SNNO75324 88 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SPAG6O75602 509 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 REM1O75628 298 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 EIF3GO75821 320 aaKnown RBP eCLIP0.1□□□□□ -2.39
VPS35-212ENST00000640313 GABARAPO95166 117 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A14O95258 325 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 FSTL3O95633 263 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RAB3DO95716 219 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM50AO95807 157 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TSPAN13O95857 204 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 HLA-DQA1P01909 254 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 HLA-DPB1P04440 258 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 IL4P05112 153 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FABP3P05413 133 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 UGT2B4P06133 528 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 C2P06681 752 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CD3GP09693 182 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR8U9P0C7N5 309 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR56A5P0C7T3 313 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 UBTFL1P0CB47 393 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 UBTFL6P0CB48 400 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 TSPY4P0CV99 314 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TSPY10P0CW01 314 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 OR5H8P0DN80 308 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 HSPA5P11021 654 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZNF35P13682 527 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 HRES1P13985 223 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ATP1B2P14415 290 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 RPA2P15927 270 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ATF6P18850 670 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CD1CP29017 333 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GNA11P29992 359 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SSTR5P35346 364 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CHI3L1P36222 383 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 ATP5C1P36542 298 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 TGFBR1P36897 503 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GPX4P36969 197 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 RPL13AP40429 203 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 GRIA1P42261 906 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CDKN1BP46527 198 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCT3P49368 545 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 RND2P52198 227 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GFERP55789 205 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FBXW4P57775 412 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GPX6P59796 221 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SEC61GP60059 68 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 NUTF2P61970 127 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 UBE2HP62256 183 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RBX1P62877 108 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CCNA1P78396 465 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ARG2P78540 354 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CRADDP78560 199 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ADARB1P78563 741 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 NUCB2P80303 420 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FLI1Q01543 452 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 SLC25A11Q02978 314 aaKnown RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 MXD1Q05195 221 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TNFRSF9Q07011 255 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GK3PQ14409 553 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 GINS1Q14691 196 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 INAQ16352 499 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 DPYSL2Q16555 572 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 RABL6Q3YEC7 729 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 NADK2Q4G0N4 442 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SOHLH1Q5JUK2 328 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 AVPI1Q5T686 147 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 FAM222AQ5U5X8 452 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 STUMQ69YW2 141 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM225Q6GV28 225 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZFP1Q6P2D0 407 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 BLOC1S2Q6QNY1 142 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 PLET1Q6UQ28 207 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 SASS6Q6UVJ0 657 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 KDELC1Q6UW63 502 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 Q6ZPB1 254 aaPredicted RBP0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM179Q6ZVK1 233 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ABHD13Q7L211 337 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 HDDC2Q7Z4H3 204 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 TMEM135Q86UB9 458 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 NT5DC3Q86UY8 548 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 ZSCAN30Q86W11 494 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 CALHM1Q8IU99 346 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 VSTM4Q8IW00 320 aa0.1□□□□□ -2.39
VPS35-212ENST00000640313 NPWQ8N729 165 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms