RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TAAR6Q96RI8 345 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PCYT1BQ9Y5K3 369 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MEIKINA0A087WXM9 373 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FBP1P09467 338 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PF4V1P10720 104 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PSMB5P28074 263 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 MAP2K6P52564 334 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 LTBQ06643 244 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RAB40BQ12829 278 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 P2RY14Q15391 338 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 VMA21Q3ZAQ7 101 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 LCN10Q6JVE6 187 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 TMPRSS11FQ6ZWK6 438 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 VRK2Q86Y07 508 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ZDHHC23Q8IYP9 409 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FCRL3Q96P31 734 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 AIG1Q9NVV5 245 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PTTG2Q9NZH5 202 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PCDHGA9Q9Y5G4 932 aaKnown RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ADAMTSL3P82987 1691 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 STRCQ7RTU9 1775 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 CSF3P09919 207 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 GM2AP17900 193 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PIN1Q13526 163 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SLC35D2Q76EJ3 337 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 PDZD9Q8IXQ8 264 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 RASL11BQ9BPW5 248 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 SEMA4CQ9C0C4 833 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 ABCG5Q9H222 651 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 FKBP11Q9NYL4 201 aa5.63□□□□□ -1.51
SCN1A-217ENST00000637988 H0Y8G0 127 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 H7BYZ3 331 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 BHLHE40O14503 412 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 IVDP26440 423 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PI4KAP42356 2102 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PSMB3P49720 205 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TNK1Q13470 666 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RRN3P1Q2M238 152 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NADK2Q4G0N4 442 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR2M7Q8NG81 312 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR4D9Q8NGE8 314 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PINX1Q96BK5 328 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MGLLQ99685 303 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GLRX2Q9NS18 164 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF705FA8MVS1 300 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PRKRAO75569 313 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HLA-AP01891 365 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF705DP0CH99 300 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF705BP0CI00 300 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PIPP12273 146 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MYF6P23409 242 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GCSHP23434 173 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 STT3AP46977 705 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF83P51522 516 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 CLDN15P56746 228 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GABARAPL2P60520 117 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF439Q8NDP4 499 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR5D13Q8NGL4 314 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR5M1Q8NGP8 315 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GALMQ96C23 342 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 REEP6Q96HR9 211 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 INPP5KQ9BT40 448 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GAL3ST2Q9H3Q3 398 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 C1RLQ9NZP8 487 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 MARCH4Q9P2E8 410 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZFP92A6NM28 416 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 FAM189A1O60320 539 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 DHRS4L1P0CG22 281 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 CAPZBP47756 277 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 BLOC1S1P78537 153 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 REEP5Q00765 189 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GK2Q14410 553 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HENMT1Q5T8I9 393 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 DESI1Q6ICB0 168 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TRILQ7L0X0 811 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 CPNE8Q86YQ8 564 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SLC15A4Q8N697 577 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ST8SIA1Q92185 356 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 POM121L2Q96KW2 1035 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PLK3Q9H4B4 646 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SLAMF8Q9P0V8 285 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HSPB11Q9Y547 144 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 PUS1Q9Y606 427 aaKnown RBP eCLIP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SULT1C2O00338 296 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 CYTIPO60759 359 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF254O75437 659 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 NSA2O95478 260 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 GMPRP36959 345 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 RBP2P50120 134 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 HNRNPFP52597 415 aaKnown RBP5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ZNF77Q15935 545 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 DOK3Q7L591 496 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TMEM135Q86UB9 458 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 KLHDC8BQ8IXV7 354 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 ASB11Q8WXH4 323 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 SARGQ9BW04 601 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 OR52D1Q9H346 318 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 TUBG2Q9NRH3 451 aa5.62□□□□□ -1.51
SCN1A-217ENST00000637988 USP3Q9Y6I4 520 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms