RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OVOL3O00110 214 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 CST2P09228 141 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 PAX1P15863 534 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 HIST1H1CP16403 213 aaKnown RBP17.95■□□□□ 0.46
CLN3-240ENST00000631023 CTLA4P16410 223 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 LAP3P28838 519 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 PCBD1P61457 104 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 GALK2Q01415 458 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 HSF2Q03933 536 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 CD300LDQ6UXZ3 194 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 GLB1L2Q8IW92 636 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 PERPQ96FX8 193 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 SNX18Q96RF0 628 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 ZNF556Q9HAH1 456 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 TBC1D23Q9NUY8 699 aa17.95■□□□□ 0.46
CLN3-240ENST00000631023 C12orf71A8MTZ7 269 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 CD8AP01732 235 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 MMP7P09237 267 aaPredicted RBP17.94■□□□□ 0.46
CLN3-240ENST00000631023 ZNF35P13682 527 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 HGFACQ04756 655 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 ETFDHQ16134 617 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 SHEQ5VZ18 495 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 LEG1Q6P5S2 330 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 OR1J2Q8NGS2 313 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 OR4K13Q8NH42 304 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 NMNAT3Q96T66 252 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 WACQ9BTA9 647 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 NUAK2Q9H093 628 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 POLE4Q9NR33 117 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 BAIAP2Q9UQB8 552 aa17.94■□□□□ 0.46
CLN3-240ENST00000631023 TIPRLO75663 272 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 ZNF32P17041 273 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 SERPINF1P36955 418 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 PTH2RP49190 550 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 DAG1Q14118 895 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 VHLLQ6RSH7 139 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 TMEM179BQ7Z7N9 219 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 SYT9Q86SS6 491 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 ALDH16A1Q8IZ83 802 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 SLC30A7Q8NEW0 376 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 FBXO17Q96EF6 278 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 NRBF2Q96F24 287 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 TSSK6Q9BXA6 273 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 ARMC1Q9NVT9 282 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 TIMM10BQ9Y5J6 103 aa17.93■□□□□ 0.46
CLN3-240ENST00000631023 BHLHE40O14503 412 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 ANXA8P13928 327 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 NR4A1P22736 598 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 ATP5J2P56134 94 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 TBC1D28Q2M2D7 210 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 PABPC1L2AQ5JQF8 200 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 SLC35F1Q5T1Q4 408 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 ZNF584Q8IVC4 421 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 OR2T33Q8NG76 320 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 OR52E2Q8NGJ4 325 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 NIPSNAP1Q9BPW8 284 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 PLA2G12AQ9BZM1 189 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 ZNF442Q9H7R0 627 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 CDH20Q9HBT6 801 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 COA3Q9Y2R0 106 aaPredicted RBP17.92■□□□□ 0.46
CLN3-240ENST00000631023 AP4S1Q9Y587 144 aa17.92■□□□□ 0.46
CLN3-240ENST00000631023 APLNRP35414 380 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 CENPAP49450 140 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.91■□□□□ 0.46
CLN3-240ENST00000631023 SNTB2Q13425 540 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 CCNIQ14094 377 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 PRSS57Q6UWY2 283 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 LNX2Q8N448 690 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 TEX47Q8TBZ9 253 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 DUS3LQ96G46 650 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 BDH2Q9BUT1 245 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 ZNF416Q9BWM5 594 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 SRA1Q9HD15 236 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 PMF1-BGLAPU3KQ54 211 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 SOX14O95416 240 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 OR4A8P0C604 315 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 FCGR1AP12314 374 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 FASP25445 335 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 CDKN1AP38936 164 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 LSM6P62312 80 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 ADAM8P78325 824 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 ENDOGQ14249 297 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 C11orf71Q6IPW1 123 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 KRT80Q6KB66 452 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 SHQ1Q6PI26 577 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 SDR9C7Q8NEX9 313 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 OR8D4Q8NGM9 314 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 UTP4Q969X6 686 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 TSSK2Q96PF2 358 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 OR2H1Q9GZK4 316 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 EMC7Q9NPA0 242 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 RPRD1BQ9NQG5 326 aaKnown RBP17.91■□□□□ 0.46
CLN3-240ENST00000631023 B9D1Q9UPM9 204 aa17.91■□□□□ 0.46
CLN3-240ENST00000631023 HIVEP1P15822 2718 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 B9A039 149 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 H3BN98 237 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 STOMP27105 288 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 APEX1P27695 318 aaKnown RBP17.9■□□□□ 0.46
CLN3-240ENST00000631023 THBS4P35443 961 aa17.9■□□□□ 0.46
CLN3-240ENST00000631023 RPS23P62266 143 aaKnown RBP17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms