RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 AP4S1Q9Y587 144 aa13.03□□□□□ -0.32
UPF1-202ENST00000594243 C12orf71A8MTZ7 269 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 OVOL3O00110 214 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 BHLHE40O14503 412 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 TIPRLO75663 272 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 CD8AP01732 235 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 MMP7P09237 267 aaPredicted RBP13.02□□□□□ -0.33
UPF1-202ENST00000594243 ZNF35P13682 527 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 ANXA8P13928 327 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 CTLA4P16410 223 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 ZNF32P17041 273 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 GALK2Q01415 458 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 HSF2Q03933 536 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 DAG1Q14118 895 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 TMEM179BQ7Z7N9 219 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 ZNF584Q8IVC4 421 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 GLB1L2Q8IW92 636 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 ALDH16A1Q8IZ83 802 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 OR52E2Q8NGJ4 325 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 OR4K13Q8NH42 304 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 NRBF2Q96F24 287 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 NMNAT3Q96T66 252 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 NIPSNAP1Q9BPW8 284 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 TSSK6Q9BXA6 273 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 POLE4Q9NR33 117 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 ZNF701Q9NV72 531 aaPredicted RBP13.02□□□□□ -0.33
UPF1-202ENST00000594243 COA3Q9Y2R0 106 aaPredicted RBP13.02□□□□□ -0.33
UPF1-202ENST00000594243 TIMM10BQ9Y5J6 103 aa13.02□□□□□ -0.33
UPF1-202ENST00000594243 F8P00451 2351 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 NR4A1P22736 598 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 FASP25445 335 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 APLNRP35414 380 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 PTH2RP49190 550 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 HGFACQ04756 655 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.01□□□□□ -0.33
UPF1-202ENST00000594243 CCNIQ14094 377 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 TBC1D28Q2M2D7 210 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 SLC35F1Q5T1Q4 408 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 VHLLQ6RSH7 139 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 LNX2Q8N448 690 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 SLC30A7Q8NEW0 376 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 OR2T33Q8NG76 320 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 UTP4Q969X6 686 aaKnown RBP13.01□□□□□ -0.33
UPF1-202ENST00000594243 FBXO17Q96EF6 278 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 PERPQ96FX8 193 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 BDH2Q9BUT1 245 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 PLA2G12AQ9BZM1 189 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 ZNF442Q9H7R0 627 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 SRA1Q9HD15 236 aaKnown RBP13.01□□□□□ -0.33
UPF1-202ENST00000594243 B9D1Q9UPM9 204 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 PMF1-BGLAPU3KQ54 211 aa13.01□□□□□ -0.33
UPF1-202ENST00000594243 H3BN98 237 aa13□□□□□ -0.33
UPF1-202ENST00000594243 SOX14O95416 240 aa13□□□□□ -0.33
UPF1-202ENST00000594243 FCGR1AP12314 374 aa13□□□□□ -0.33
UPF1-202ENST00000594243 SERPINF1P36955 418 aa13□□□□□ -0.33
UPF1-202ENST00000594243 CENPAP49450 140 aa13□□□□□ -0.33
UPF1-202ENST00000594243 LSM6P62312 80 aaKnown RBP13□□□□□ -0.33
UPF1-202ENST00000594243 PSG4Q00888 419 aa13□□□□□ -0.33
UPF1-202ENST00000594243 PABPC1L2AQ5JQF8 200 aa13□□□□□ -0.33
UPF1-202ENST00000594243 KRT80Q6KB66 452 aa13□□□□□ -0.33
UPF1-202ENST00000594243 SHQ1Q6PI26 577 aaKnown RBP13□□□□□ -0.33
UPF1-202ENST00000594243 PRSS57Q6UWY2 283 aa13□□□□□ -0.33
UPF1-202ENST00000594243 C10orf67Q8IYJ2 551 aa13□□□□□ -0.33
UPF1-202ENST00000594243 OR6V1Q8N148 313 aa13□□□□□ -0.33
UPF1-202ENST00000594243 OR8D4Q8NGM9 314 aa13□□□□□ -0.33
UPF1-202ENST00000594243 TEX47Q8TBZ9 253 aa13□□□□□ -0.33
UPF1-202ENST00000594243 ZNF416Q9BWM5 594 aa13□□□□□ -0.33
UPF1-202ENST00000594243 NTN4Q9HB63 628 aa13□□□□□ -0.33
UPF1-202ENST00000594243 CDH20Q9HBT6 801 aa13□□□□□ -0.33
UPF1-202ENST00000594243 RPRD1BQ9NQG5 326 aaKnown RBP13□□□□□ -0.33
UPF1-202ENST00000594243 ZKSCAN7Q9P0L1 754 aaPredicted RBP13□□□□□ -0.33
UPF1-202ENST00000594243 KLHL21Q9UJP4 597 aa13□□□□□ -0.33
UPF1-202ENST00000594243 FBXO9Q9UK97 447 aaPredicted RBP13□□□□□ -0.33
UPF1-202ENST00000594243 FKBP7Q9Y680 259 aa13□□□□□ -0.33
UPF1-202ENST00000594243 HIVEP1P15822 2718 aa13□□□□□ -0.33
UPF1-202ENST00000594243 OR6C68A6NDL8 312 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 B9A039 149 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 SNAP29O95721 258 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 TP53P04637 393 aaPredicted RBP12.99□□□□□ -0.33
UPF1-202ENST00000594243 SCG5P05408 212 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 IGFBP1P08833 259 aaPredicted RBP12.99□□□□□ -0.33
UPF1-202ENST00000594243 OR4A8P0C604 315 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 OSMP13725 252 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 PRKACGP22612 351 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 STOMP27105 288 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 THBS4P35443 961 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 GLRXP35754 106 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 CDKN1AP38936 164 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 RAD52P43351 418 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 ATP5J2P56134 94 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 ADAM8P78325 824 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 GLO1Q04760 184 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 SCRN3Q0VDG4 424 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 SNTB2Q13425 540 aaKnown RBP12.99□□□□□ -0.33
UPF1-202ENST00000594243 ENDOGQ14249 297 aaKnown RBP12.99□□□□□ -0.33
UPF1-202ENST00000594243 ADIPOQQ15848 244 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 ATP6AP1Q15904 470 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 KCNMB1Q16558 191 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 C11orf71Q6IPW1 123 aa12.99□□□□□ -0.33
UPF1-202ENST00000594243 UGT2A3Q6UWM9 527 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms