RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MMP7P09237 267 aaPredicted RBP9.04□□□□□ -0.96
LIG3-212ENST00000590181 MSR1P21757 451 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 PCMT1P22061 227 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 CRABP1P29762 137 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SDHAP31040 664 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 NR4A2P43354 598 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 HMGA2P52926 109 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 LSM6P62312 80 aaKnown RBP9.04□□□□□ -0.96
LIG3-212ENST00000590181 SF3A3Q12874 501 aaKnown RBP eCLIP9.04□□□□□ -0.96
LIG3-212ENST00000590181 MELKQ14680 651 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 RAB39AQ14964 217 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 TMEM249Q2WGJ8 235 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 ZNF718Q3SXZ3 478 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 ZMAT1Q5H9K5 638 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 RGS7BPQ6MZT1 257 aaPredicted RBP9.04□□□□□ -0.96
LIG3-212ENST00000590181 SLC25A47Q6Q0C1 308 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 VHLLQ6RSH7 139 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 ZNF525Q8N782 197 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 LRRC75AQ8NAA5 344 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SYT14Q8NB59 555 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 OR51A7Q8NH64 312 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 MOSPD2Q8NHP6 518 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 UBASH3BQ8TF42 649 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SNX33Q8WV41 574 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 DIRC2Q96SL1 478 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 CDRT15Q96T59 188 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SH3GL3Q99963 347 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 C19orf24Q9BVV8 132 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 C1orf21Q9H246 121 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 NRIP3Q9NQ35 241 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 ACTR3BQ9P1U1 418 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 NDRG4Q9ULP0 352 aaKnown RBP9.04□□□□□ -0.96
LIG3-212ENST00000590181 TMCC3Q9ULS5 477 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 SNX13Q9Y5W8 968 aa9.04□□□□□ -0.96
LIG3-212ENST00000590181 IGLV3-9A0A075B6K5 115 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 IGHV4-30-2A0A087WSY4 118 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 A0A096LNT2 108 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 PRSS37A4D1T9 235 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 ZNF503-AS2A6NEH8 195 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 ARPC3O15145 178 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 GADD45GO95257 159 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 STAMBPO95630 424 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 IGHV3-13P01766 116 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 FABP3P05413 133 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 DAOP14920 347 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 ZNF16P17020 682 aaPredicted RBP9.03□□□□□ -0.96
LIG3-212ENST00000590181 MAKP20794 623 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 CALB2P22676 271 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 STOMP27105 288 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 GDI2P50395 445 aaKnown RBP9.03□□□□□ -0.96
LIG3-212ENST00000590181 ARHGDIAP52565 204 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 CHN2P52757 468 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 KLF3P57682 345 aaPredicted RBP9.03□□□□□ -0.96
LIG3-212ENST00000590181 MXRA7P84157 204 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SCRN3Q0VDG4 424 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 FHL1Q13642 323 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SGCAQ16586 387 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 KRT80Q6KB66 452 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 DNM1P34Q6PK57 102 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SMARCD3Q6STE5 483 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 ZNF584Q8IVC4 421 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SYNPRQ8TBG9 265 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 HDAC2Q92769 488 aaKnown RBP9.03□□□□□ -0.96
LIG3-212ENST00000590181 RDH5Q92781 318 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 NSL1Q96IY1 281 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SORCS2Q96PQ0 1159 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 CCT8L2Q96SF2 557 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 ZNF416Q9BWM5 594 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 TRIM15Q9C019 465 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 MAGIXQ9H6Y5 334 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 EGFL7Q9UHF1 273 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SIGLEC7Q9Y286 467 aa9.03□□□□□ -0.96
LIG3-212ENST00000590181 SVEP1Q4LDE5 3571 aa9.02□□□□□ -0.96
LIG3-212ENST00000590181 TRAV27A0A087WT01 109 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 TEX13CA0A0J9YWL9 993 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 J3KTA2 159 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 GPRIN2O60269 458 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 SEC14L2O76054 403 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 SEMG1P04279 462 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 ADRA2AP08913 450 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 TACSTD2P09758 323 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 ZNF23P17027 643 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 PTNP21246 168 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 ACHEP22303 614 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 FPR3P25089 353 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 LAP3P28838 519 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 GCH1P30793 250 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 RRM2P31350 389 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 YAP1P46937 504 aaKnown RBP9.02□□□□□ -0.97
LIG3-212ENST00000590181 OMPP47874 163 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 LIMS1P48059 325 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 RUNX1T1Q06455 604 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 KCNMB1Q16558 191 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 IQCCQ4KMZ1 466 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 PABPC1L2AQ5JQF8 200 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 FGD3Q5JSP0 725 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 TMEM154Q6P9G4 183 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 FAM122BQ7Z309 247 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 GLB1L2Q8IW92 636 aa9.02□□□□□ -0.97
LIG3-212ENST00000590181 DEFB107AQ8IZN7 70 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms