RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CD97P48960 835 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 BCAP31P51572 246 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 PSMD7P51665 324 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 B3GALT5-AS1P59052 145 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 HIST3H3Q16695 136 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 PYDC2Q56P42 97 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 LRRC69Q6ZNQ3 347 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.65□□□□□ -0.38
LIG3-205ENST00000585941 ZNF227Q86WZ6 799 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 CLEC1AQ8NC01 280 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 DEFB124Q8NES8 71 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 RGP1Q92546 391 aaPredicted RBP12.65□□□□□ -0.38
LIG3-205ENST00000585941 FOXN4Q96NZ1 517 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 FAM173AQ9BQD7 235 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 EMC6Q9BV81 110 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 OR2B2Q9GZK3 357 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 PPP1R3EQ9H7J1 279 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 TCF7L1Q9HCS4 588 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 CYSLTR2Q9NS75 346 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 RABL2AQ9UBK7 228 aaPredicted RBP12.65□□□□□ -0.38
LIG3-205ENST00000585941 ING1Q9UK53 422 aaPredicted RBP12.65□□□□□ -0.38
LIG3-205ENST00000585941 RABL2BQ9UNT1 228 aa12.65□□□□□ -0.38
LIG3-205ENST00000585941 LRRC3CA6NJW4 275 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 NPR2P20594 1047 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 ITGA3P26006 1051 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 DCTDP32321 178 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 CD96P40200 585 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 OR10A3P58181 314 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 RAC3P60763 192 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 KCNMB1Q16558 191 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 CEP78Q5JTW2 689 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 SLC25A47Q6Q0C1 308 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 RHOUQ7L0Q8 258 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 ST7LQ8TDW4 575 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 PNPLA2Q96AD5 504 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 INTS12Q96CB8 462 aaKnown RBP12.64□□□□□ -0.39
LIG3-205ENST00000585941 SF3B5Q9BWJ5 86 aaKnown RBP12.64□□□□□ -0.39
LIG3-205ENST00000585941 C14orf119Q9NWQ9 140 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 B4GALT7Q9UBV7 327 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 LRP12Q9Y561 859 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 MRPS18BQ9Y676 258 aaKnown RBP12.64□□□□□ -0.39
LIG3-205ENST00000585941 TRBV5-7A0A0A0MS05 114 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 A0A1W2PPK0 400 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 FUOMA2VDF0 154 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 ACOD1A6NK06 481 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 ZNF814B7Z6K7 855 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 NPIPA2E9PIF3 369 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 NPIPA3F8WFD2 350 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 PIN1P1O15428 100 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 MPZL1O95297 269 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 GABREP78334 506 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 CAMK2DQ13557 499 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 IL18Q14116 193 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 WDR38Q5JTN6 314 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 BAIAP2L2Q6UXY1 529 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 ESPNLQ6ZVH7 1005 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 DCXRQ7Z4W1 244 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.64□□□□□ -0.39
LIG3-205ENST00000585941 PRSS35Q8N3Z0 413 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 SAMD12Q8N8I0 201 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 TRMT10AQ8TBZ6 339 aaKnown RBP12.64□□□□□ -0.39
LIG3-205ENST00000585941 RNF133Q8WVZ7 376 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 C11orf40Q8WZ69 217 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 IRF2BPLQ9H1B7 796 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 C1orf198Q9H425 327 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 TIGARQ9NQ88 270 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 POLE4Q9NR33 117 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 CYB5R1Q9UHQ9 305 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 R4GMQ9 66 aa12.64□□□□□ -0.39
LIG3-205ENST00000585941 IGKV1D-43A0A0B4J1Z2 117 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 A0A0G2JMM0 328 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 A0A0J9YW62 118 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 A0A1W2PPB8 328 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 A0A1W2PRS3 328 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 TRABD2BA6NFA1 517 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 KIR3DP1A8MWS1 328 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 AIPO00170 330 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 ELK1P19419 428 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 AZGP1P25311 298 aaKnown RBP12.63□□□□□ -0.39
LIG3-205ENST00000585941 KIR3DL2P43630 455 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 CLDN17P56750 224 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 BAK1Q16611 211 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 SLC25A35Q3KQZ1 300 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 AGAP7PQ5VUJ5 663 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 CREB3L2Q70SY1 520 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 CATSPERDQ86XM0 798 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 DTX1Q86Y01 620 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 WDFY1Q8IWB7 410 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 Q8N402 240 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 ADAMTS14Q8WXS8 1223 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 SFXN2Q96NB2 322 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 EXTL2Q9UBQ6 330 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 IL17BQ9UHF5 180 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 SPATA2Q9UM82 520 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 V9GY05 133 aa12.63□□□□□ -0.39
LIG3-205ENST00000585941 A0A1W2PPL8 197 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 A0A1W2PQ09 198 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 CDRT15L2A8MXV6 281 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 TNFRSF10AO00220 468 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 NEURL1O76050 574 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms