RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 BHLHE40O14503 412 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 SLC16A7O60669 478 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 TP53P04637 393 aaPredicted RBP16.7■□□□□ 0.26
SS18-208ENST00000577751 HIST1H1CP16403 213 aaKnown RBP16.7■□□□□ 0.26
SS18-208ENST00000577751 ZNF32P17041 273 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 GSTM3P21266 225 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 MSR1P21757 451 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 SERPINF1P36955 418 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 ATP5J2P56134 94 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 CBX1P83916 185 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 ENDOGQ14249 297 aaKnown RBP16.7■□□□□ 0.26
SS18-208ENST00000577751 CD300LDQ6UXZ3 194 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 SYT9Q86SS6 491 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 OR8D4Q8NGM9 314 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 GIPC3Q8TF64 312 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 NIPSNAP1Q9BPW8 284 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 WACQ9BTA9 647 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 PLA2G12AQ9BZM1 189 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 DNAJB9Q9UBS3 223 aa16.7■□□□□ 0.26
SS18-208ENST00000577751 MED13LQ71F56 2210 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 F8P00451 2351 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 GNGT2O14610 69 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 KHDRBS3O75525 346 aaKnown RBP16.69■□□□□ 0.26
SS18-208ENST00000577751 PTHP01270 115 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 THBS4P35443 961 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 ERFP50548 548 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 PSG4Q00888 419 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 PLP2Q04941 152 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 COX10Q12887 443 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 SNTB2Q13425 540 aaKnown RBP16.69■□□□□ 0.26
SS18-208ENST00000577751 DAG1Q14118 895 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 EFNB3Q15768 340 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 PABPC1L2AQ5JQF8 200 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 KRT80Q6KB66 452 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 VHLLQ6RSH7 139 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 UGT2A3Q6UWM9 527 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
SS18-208ENST00000577751 CPEB3Q8NE35 698 aaKnown RBP16.69■□□□□ 0.26
SS18-208ENST00000577751 SLC30A7Q8NEW0 376 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 OR52L1Q8NGH7 329 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 OR4K13Q8NH42 304 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 NMNAT3Q96T66 252 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 FEVQ99581 238 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 ZNF416Q9BWM5 594 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 CACNG6Q9BXT2 260 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 CCNB1IP1Q9NPC3 277 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 COA3Q9Y2R0 106 aaPredicted RBP16.69■□□□□ 0.26
SS18-208ENST00000577751 ARFGEF3Q5TH69 2177 aa16.69■□□□□ 0.26
SS18-208ENST00000577751 IQCMA0A1B0GVH7 501 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 B9A039 149 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 H7C417 338 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 DCTN6O00399 190 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 NDUFS7O75251 213 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 SNAP29O95721 258 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 OR4A8P0C604 315 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 NOS3P29474 1203 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 CRABP1P29762 137 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 GLRXP35754 106 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 CLEC12AQ5QGZ9 265 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 ZNF362Q5T0B9 420 aaPredicted RBP16.68■□□□□ 0.26
SS18-208ENST00000577751 LEG1Q6P5S2 330 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 JAZF1Q86VZ6 243 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 GLB1L2Q8IW92 636 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 PAQR4Q8N4S7 273 aaPredicted RBP16.68■□□□□ 0.26
SS18-208ENST00000577751 NPEPL1Q8NDH3 523 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 DUS3LQ96G46 650 aaKnown RBP16.68■□□□□ 0.26
SS18-208ENST00000577751 TSSK2Q96PF2 358 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 DDOQ99489 341 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 NTN4Q9HB63 628 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 SPEF1Q9Y4P9 236 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 TIMM10BQ9Y5J6 103 aa16.68■□□□□ 0.26
SS18-208ENST00000577751 IGLV1-36A0A0B4J1U3 117 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 C12orf71A8MTZ7 269 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 VSTM5A8MXK1 200 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 RENP00797 406 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 IGHV4-39P01824 125 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 IGFBP1P08833 259 aaPredicted RBP16.67■□□□□ 0.26
SS18-208ENST00000577751 BMP4P12644 408 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 APEX1P27695 318 aaKnown RBP16.67■□□□□ 0.26
SS18-208ENST00000577751 PCBD1P61457 104 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 LSM6P62312 80 aaKnown RBP16.67■□□□□ 0.26
SS18-208ENST00000577751 HSF2Q03933 536 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 KCNMB1Q16558 191 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 SLC35F1Q5T1Q4 408 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 C1orf146Q5VVC0 180 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 ZBTB46Q86UZ6 589 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 OR6V1Q8N148 313 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 LNX2Q8N448 690 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 OR52E2Q8NGJ4 325 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 OR1J2Q8NGS2 313 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 UTP4Q969X6 686 aaKnown RBP16.67■□□□□ 0.26
SS18-208ENST00000577751 FOXN4Q96NZ1 517 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 TSSK6Q9BXA6 273 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 OR2H1Q9GZK4 316 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 WNT5BQ9H1J7 359 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 PLK3Q9H4B4 646 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 EMC7Q9NPA0 242 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 DLL4Q9NR61 685 aa16.67■□□□□ 0.26
SS18-208ENST00000577751 PDP1Q9P0J1 537 aaPredicted RBP16.67■□□□□ 0.26
SS18-208ENST00000577751 REV1Q9UBZ9 1251 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms